Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | BST95_RS17440 | Genome accession | NZ_CP019450 |
| Coordinates | 3714159..3715376 (+) | Length | 405 a.a. |
| NCBI ID | WP_084200730.1 | Uniprot ID | A0AAP8SP52 |
| Organism | Halioglobus japonicus strain NBRC 107739 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3709159..3720376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BST95_RS17425 (BST95_17430) | - | 3709408..3711330 (-) | 1923 | WP_157114513.1 | hypothetical protein | - |
| BST95_RS17430 (BST95_17435) | - | 3711495..3711986 (-) | 492 | WP_157114514.1 | pilin | - |
| BST95_RS17435 (BST95_17440) | pilB | 3712413..3714128 (+) | 1716 | WP_084200729.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BST95_RS17440 (BST95_17445) | pilC | 3714159..3715376 (+) | 1218 | WP_084200730.1 | type II secretion system F family protein | Machinery gene |
| BST95_RS17445 (BST95_17450) | pilD | 3715407..3716270 (+) | 864 | WP_084200731.1 | prepilin peptidase | Machinery gene |
| BST95_RS17450 (BST95_17455) | coaE | 3716267..3716857 (+) | 591 | WP_084200732.1 | dephospho-CoA kinase | - |
| BST95_RS17455 (BST95_17460) | mutT | 3716849..3717244 (-) | 396 | WP_084200733.1 | 8-oxo-dGTP diphosphatase MutT | - |
| BST95_RS17460 (BST95_17465) | argJ | 3717245..3718471 (-) | 1227 | WP_084200734.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 43811.38 Da Isoelectric Point: 8.7970
>NTDB_id=215906 BST95_RS17440 WP_084200730.1 3714159..3715376(+) (pilC) [Halioglobus japonicus strain NBRC 107739]
MATATGNDLYIWSGTDKNGRNTKGEISASSQAMAKAQLRRQGVVPKSVKKKPKPLFGGKGKPIKPEDIATFTRQLATMMK
AGVPLVQSFEIVADGADKETMREMIVAIKNDVASGTGLAPSLEKYPRHFDDLYCSLVASGEESGTLEVMLDRVATYKEKS
EALKRKIKKAMTYPLAVIAVAVVVTVILLVKVVPTFAVTFRGFGSDLPAFTLFVLKISEFVQEWWFIFLIACIAAFFAFK
EAKFRSVKFAEFLDKMALKAPVIGGIVHDAVIARFSRTLSTTFAAGVPLVDALESTAGAAGNAIYAKAIRQIKDDVTTGT
TLYNAIRTTGLFPNLLLQMVSIGEESGSLDEMLDKVADHYEEAVDNAVDNLSALLEPMIMSILGVLVGGLLVAMYLPIFM
LGTVI
MATATGNDLYIWSGTDKNGRNTKGEISASSQAMAKAQLRRQGVVPKSVKKKPKPLFGGKGKPIKPEDIATFTRQLATMMK
AGVPLVQSFEIVADGADKETMREMIVAIKNDVASGTGLAPSLEKYPRHFDDLYCSLVASGEESGTLEVMLDRVATYKEKS
EALKRKIKKAMTYPLAVIAVAVVVTVILLVKVVPTFAVTFRGFGSDLPAFTLFVLKISEFVQEWWFIFLIACIAAFFAFK
EAKFRSVKFAEFLDKMALKAPVIGGIVHDAVIARFSRTLSTTFAAGVPLVDALESTAGAAGNAIYAKAIRQIKDDVTTGT
TLYNAIRTTGLFPNLLLQMVSIGEESGSLDEMLDKVADHYEEAVDNAVDNLSALLEPMIMSILGVLVGGLLVAMYLPIFM
LGTVI
Nucleotide
Download Length: 1218 bp
>NTDB_id=215906 BST95_RS17440 WP_084200730.1 3714159..3715376(+) (pilC) [Halioglobus japonicus strain NBRC 107739]
ATGGCAACAGCGACCGGAAACGATTTATACATCTGGAGCGGTACCGACAAAAATGGCCGCAATACCAAAGGCGAAATCAG
CGCCTCCAGCCAGGCCATGGCGAAGGCACAATTGCGCCGCCAGGGCGTGGTGCCCAAATCTGTGAAGAAAAAGCCCAAGC
CGCTCTTCGGTGGCAAAGGCAAGCCGATTAAACCCGAAGACATCGCCACCTTCACCCGCCAGTTGGCAACCATGATGAAG
GCGGGTGTGCCACTGGTACAAAGTTTCGAAATTGTCGCCGATGGCGCTGACAAGGAAACCATGCGCGAGATGATTGTCGC
GATCAAGAACGACGTGGCATCCGGCACCGGCCTGGCGCCATCCCTCGAAAAGTACCCTCGCCACTTTGACGACCTTTACT
GCAGCCTCGTAGCATCCGGTGAAGAGTCGGGCACCCTGGAAGTCATGCTTGACCGGGTCGCCACCTATAAGGAAAAAAGC
GAAGCACTGAAACGCAAGATTAAAAAGGCCATGACCTACCCACTGGCGGTGATTGCCGTGGCTGTCGTGGTAACCGTGAT
TCTGCTGGTCAAGGTGGTGCCGACGTTTGCGGTGACCTTCCGCGGCTTTGGTTCAGATCTGCCCGCATTCACACTGTTCG
TATTGAAGATCTCAGAGTTCGTGCAGGAGTGGTGGTTTATATTCCTTATTGCATGTATCGCCGCATTCTTTGCGTTCAAG
GAAGCCAAATTCCGCTCGGTCAAATTTGCCGAGTTTCTCGACAAGATGGCCCTGAAAGCCCCGGTGATCGGTGGCATCGT
CCACGATGCGGTTATTGCGCGTTTCTCGCGCACGCTGTCGACCACATTTGCAGCGGGTGTGCCTCTGGTCGACGCGCTGG
AATCGACCGCTGGCGCCGCGGGCAACGCGATTTATGCCAAGGCCATTCGCCAGATCAAGGACGACGTTACTACCGGTACC
ACCCTGTACAACGCCATTCGCACCACCGGCCTGTTCCCGAATCTGCTGCTGCAAATGGTCTCAATTGGTGAAGAGTCAGG
CTCTCTGGATGAAATGCTCGACAAGGTGGCCGACCACTATGAAGAGGCCGTCGACAACGCGGTGGACAACCTGAGCGCCC
TGCTGGAGCCGATGATCATGTCAATCCTCGGCGTGCTGGTAGGTGGCCTGCTGGTTGCCATGTACCTCCCCATCTTCATG
CTCGGTACCGTCATCTAA
ATGGCAACAGCGACCGGAAACGATTTATACATCTGGAGCGGTACCGACAAAAATGGCCGCAATACCAAAGGCGAAATCAG
CGCCTCCAGCCAGGCCATGGCGAAGGCACAATTGCGCCGCCAGGGCGTGGTGCCCAAATCTGTGAAGAAAAAGCCCAAGC
CGCTCTTCGGTGGCAAAGGCAAGCCGATTAAACCCGAAGACATCGCCACCTTCACCCGCCAGTTGGCAACCATGATGAAG
GCGGGTGTGCCACTGGTACAAAGTTTCGAAATTGTCGCCGATGGCGCTGACAAGGAAACCATGCGCGAGATGATTGTCGC
GATCAAGAACGACGTGGCATCCGGCACCGGCCTGGCGCCATCCCTCGAAAAGTACCCTCGCCACTTTGACGACCTTTACT
GCAGCCTCGTAGCATCCGGTGAAGAGTCGGGCACCCTGGAAGTCATGCTTGACCGGGTCGCCACCTATAAGGAAAAAAGC
GAAGCACTGAAACGCAAGATTAAAAAGGCCATGACCTACCCACTGGCGGTGATTGCCGTGGCTGTCGTGGTAACCGTGAT
TCTGCTGGTCAAGGTGGTGCCGACGTTTGCGGTGACCTTCCGCGGCTTTGGTTCAGATCTGCCCGCATTCACACTGTTCG
TATTGAAGATCTCAGAGTTCGTGCAGGAGTGGTGGTTTATATTCCTTATTGCATGTATCGCCGCATTCTTTGCGTTCAAG
GAAGCCAAATTCCGCTCGGTCAAATTTGCCGAGTTTCTCGACAAGATGGCCCTGAAAGCCCCGGTGATCGGTGGCATCGT
CCACGATGCGGTTATTGCGCGTTTCTCGCGCACGCTGTCGACCACATTTGCAGCGGGTGTGCCTCTGGTCGACGCGCTGG
AATCGACCGCTGGCGCCGCGGGCAACGCGATTTATGCCAAGGCCATTCGCCAGATCAAGGACGACGTTACTACCGGTACC
ACCCTGTACAACGCCATTCGCACCACCGGCCTGTTCCCGAATCTGCTGCTGCAAATGGTCTCAATTGGTGAAGAGTCAGG
CTCTCTGGATGAAATGCTCGACAAGGTGGCCGACCACTATGAAGAGGCCGTCGACAACGCGGTGGACAACCTGAGCGCCC
TGCTGGAGCCGATGATCATGTCAATCCTCGGCGTGCTGGTAGGTGGCCTGCTGGTTGCCATGTACCTCCCCATCTTCATG
CTCGGTACCGTCATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
58.458 |
99.259 |
0.58 |
| pilC | Acinetobacter baumannii D1279779 |
58.942 |
98.025 |
0.578 |
| pilC | Acinetobacter baylyi ADP1 |
55.779 |
98.272 |
0.548 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.556 |
97.778 |
0.543 |
| pilG | Neisseria gonorrhoeae MS11 |
46.475 |
94.568 |
0.44 |
| pilG | Neisseria meningitidis 44/76-A |
46.475 |
94.568 |
0.44 |
| pilC | Vibrio cholerae strain A1552 |
43.687 |
97.778 |
0.427 |
| pilC | Vibrio campbellii strain DS40M4 |
41.414 |
97.778 |
0.405 |