Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PspS34_RS23880 Genome accession   NZ_CP019398
Coordinates   5349611..5350828 (+) Length   405 a.a.
NCBI ID   WP_154862184.1    Uniprot ID   -
Organism   Pseudomonas sp. S34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5344611..5355828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS34_RS23860 (PspS34_24260) - 5344790..5347747 (+) 2958 WP_154862185.1 DUF748 domain-containing protein -
  PspS34_RS23865 (PspS34_24265) - 5347747..5348040 (+) 294 WP_173677975.1 DUF2845 domain-containing protein -
  PspS34_RS23870 (PspS34_24270) - 5348307..5348663 (-) 357 WP_057713265.1 BON domain-containing protein -
  PspS34_RS23875 (PspS34_24275) - 5348964..5349383 (-) 420 WP_057713264.1 pilin -
  PspS34_RS23880 (PspS34_24280) pilC 5349611..5350828 (+) 1218 WP_154862184.1 type II secretion system F family protein Machinery gene
  PspS34_RS23885 (PspS34_24285) pilD 5350830..5351702 (+) 873 WP_102672244.1 A24 family peptidase Machinery gene
  PspS34_RS23890 (PspS34_24290) coaE 5351699..5352322 (+) 624 WP_046041800.1 dephospho-CoA kinase -
  PspS34_RS23895 (PspS34_24295) yacG 5352319..5352519 (+) 201 WP_007970539.1 DNA gyrase inhibitor YacG -
  PspS34_RS23900 (PspS34_24300) - 5352555..5353244 (-) 690 WP_007990394.1 energy-coupling factor ABC transporter permease -
  PspS34_RS23905 (PspS34_24305) - 5353316..5354248 (-) 933 WP_057713260.1 LysR family transcriptional regulator -
  PspS34_RS23910 (PspS34_24310) - 5354370..5354612 (+) 243 WP_150813471.1 DUF2790 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44293.33 Da        Isoelectric Point: 10.2572

>NTDB_id=215188 PspS34_RS23880 WP_154862184.1 5349611..5350828(+) (pilC) [Pseudomonas sp. S34]
MAVKAAKISVYAWEGIDRKGTKVTGELSAQNPALIKAKLRKQGISPGKVRKKNHSVFSMGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDELKQEVAAGSSFAAALRKKPRYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKARIRKAMTYPLVVVFVAAIVTGILLVNVVPQFESVFKGFGAELPAFTVMVIGLSQFMQAWWWVVLVTLITMTFGVR
HALRTSPALRDRMDTWLLKLPLVGTLMHKSAVARFARTLSTTFAAGVPLVEALESVAGATGNSVFKRAVLRIRQDISTGM
QLHFAMRTCGVFPNMAIQMTAIGEESGTLDAMLDKVAGFYEDNVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=215188 PspS34_RS23880 WP_154862184.1 5349611..5350828(+) (pilC) [Pseudomonas sp. S34]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTGTATGCGTGGGAAGGCATCGACCGCAAAGGCACAAAAGTGACCGGCGAACT
CAGCGCTCAGAACCCGGCGCTGATCAAGGCGAAACTGCGTAAGCAAGGCATCAGTCCGGGCAAGGTTCGCAAAAAAAACC
ATTCGGTTTTCAGCATGGGCAAGCGTATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAAATGGCGACAATGATGAAG
GCCGGCGTGCCGTTGTTGCAGTCCTTCGACATCATCGGCGAGGGCTTCGACAATCCGGCCATGCGCAAGCTGGTGGACGA
ACTGAAACAGGAAGTTGCGGCAGGCAGCAGTTTCGCCGCCGCCCTGCGCAAGAAGCCCCGGTATTTCGATGAGCTGTATT
GCAACCTGGTGGATGCCGGCGAGCAGGCCGGTGCCCTCGACACCCTTTTGGAGCGGGTCGCGACCTACAAGGAAAAAAGC
GAAAGCCTCAAGGCCAGGATCAGGAAAGCCATGACCTACCCGCTGGTGGTGGTGTTCGTCGCGGCGATTGTCACCGGGAT
CCTGCTGGTCAATGTCGTGCCGCAGTTCGAATCGGTGTTCAAAGGCTTTGGCGCCGAACTGCCGGCCTTCACCGTGATGG
TCATTGGCCTCTCGCAATTCATGCAAGCCTGGTGGTGGGTGGTCCTTGTCACGCTGATCACGATGACCTTCGGCGTACGC
CACGCCCTCAGGACATCCCCGGCCTTGCGTGACCGGATGGACACCTGGCTGCTGAAACTGCCGCTGGTGGGCACCCTGAT
GCACAAGTCCGCCGTGGCCCGGTTCGCCCGTACTTTGTCGACCACTTTCGCTGCCGGCGTGCCGCTGGTGGAGGCTCTGG
AATCAGTGGCCGGTGCGACCGGCAATAGCGTGTTCAAGCGCGCGGTATTGCGCATCCGGCAGGACATCTCGACCGGCATG
CAATTGCATTTCGCCATGCGCACCTGCGGCGTCTTTCCGAACATGGCGATACAAATGACTGCAATTGGCGAAGAGTCCGG
CACCCTGGACGCTATGCTCGACAAAGTCGCGGGGTTCTACGAAGACAACGTCGATAACATGGTCGATAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGTGGACTGGTAGTTGCCATGTACCTGCCCATCTTCCAA
CTTGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

70.123

100

0.701
  pilC Acinetobacter baylyi ADP1

56.373

100

0.568
  pilC Acinetobacter baumannii D1279779

56.127

100

0.565
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilG Neisseria gonorrhoeae MS11

42.289

99.259

0.42
  pilG Neisseria meningitidis 44/76-A

41.975

100

0.42
  pilC Vibrio cholerae strain A1552

42.677

97.778

0.417
  pilC Vibrio campbellii strain DS40M4

40.64

100

0.407
  pilC Thermus thermophilus HB27

37.905

99.012

0.375

Multiple sequence alignment