Detailed information NTG0215189

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PspS34_RS23885
• Genome accession: NZ_CP019398
• Coordinates: 5350830..5351702 (+)
• Length: 290 a.a.
• NCBI ID: WP_102672244.1
• Uniprot ID: -
• Organism: Pseudomonas sp. S34
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5345830..5356702

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PspS34_RS23865 (PspS34_24265)	-	5347747..5348040 (+)	294	WP_173677975.1	DUF2845 domain-containing protein	-
PspS34_RS23870 (PspS34_24270)	-	5348307..5348663 (-)	357	WP_057713265.1	BON domain-containing protein	-
PspS34_RS23875 (PspS34_24275)	-	5348964..5349383 (-)	420	WP_057713264.1	pilin	-
PspS34_RS23880 (PspS34_24280)	pilC	5349611..5350828 (+)	1218	WP_154862184.1	type II secretion system F family protein	Machinery gene
PspS34_RS23885 (PspS34_24285)	pilD	5350830..5351702 (+)	873	WP_102672244.1	A24 family peptidase	Machinery gene
PspS34_RS23890 (PspS34_24290)	coaE	5351699..5352322 (+)	624	WP_046041800.1	dephospho-CoA kinase	-
PspS34_RS23895 (PspS34_24295)	yacG	5352319..5352519 (+)	201	WP_007970539.1	DNA gyrase inhibitor YacG	-
PspS34_RS23900 (PspS34_24300)	-	5352555..5353244 (-)	690	WP_007990394.1	energy-coupling factor ABC transporter permease	-
PspS34_RS23905 (PspS34_24305)	-	5353316..5354248 (-)	933	WP_057713260.1	LysR family transcriptional regulator	-
PspS34_RS23910 (PspS34_24310)	-	5354370..5354612 (+)	243	WP_150813471.1	DUF2790 domain-containing protein	-
PspS34_RS23915 (PspS34_24315)	-	5354622..5355890 (-)	1269	WP_154862183.1	OprD family porin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32115.33 Da
• Isoelectric Point: 7.6848

>NTDB_id=215189 PspS34_RS23885 WP_102672244.1 5350830..5351702(+) (pilD) [Pseudomonas sp. S34]
MPLNEILTQSALAFVLLAGITGLLVGSFLNVVIWRLPKMLERDWREQAHDILGLPGETPLPTYNLLLPHSQCPHCGHRIR
AWENIPLLSYVFLRGRCSACAAAISPRYPLTELACGLLSAFVAWHFGFGWPACLMLVLSWGLLAMSLIDAEHQILPDVLV
LPLIWLGLIVNSFGLFVSLHEALWGAIAGYSLLWSVFWLFKLITGKDGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AIIGLMLLRWRNAKTSTPIPFGPYLAIAGWIALLWGGQITDLYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=215189 PspS34_RS23885 WP_102672244.1 5350830..5351702(+) (pilD) [Pseudomonas sp. S34]
ATGCCCTTGAATGAAATCCTGACTCAATCTGCGCTGGCCTTTGTCCTTCTCGCAGGCATCACCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTGATCTGGCGCCTGCCAAAAATGCTCGAACGCGACTGGCGCGAGCAGGCCCATGACATTCTCGGGC
TGCCAGGCGAAACGCCGCTGCCGACCTACAACCTGTTGCTGCCCCACTCCCAGTGCCCGCACTGCGGTCACCGCATCCGC
GCCTGGGAAAACATCCCGCTGCTCAGTTATGTGTTTTTGCGCGGCCGCTGCTCAGCCTGTGCGGCCGCGATCAGCCCGCG
CTATCCGTTGACCGAACTGGCCTGCGGCCTGTTGTCGGCATTTGTTGCCTGGCACTTCGGCTTCGGTTGGCCCGCCTGCC
TGATGCTGGTCCTGAGCTGGGGTTTGCTGGCGATGAGCCTGATCGACGCCGAGCATCAGATATTGCCGGACGTACTGGTG
CTGCCGTTGATATGGCTGGGGTTGATCGTCAACAGTTTCGGCCTGTTCGTGTCGTTGCACGAGGCGCTTTGGGGGGCGAT
AGCCGGTTACAGCCTGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACGGGCAAGGACGGCATGGGCTACGGTGATT
TCAAGTTACTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGATTTTGCCGCTGACCATCCTGCTGTCCTCGCTGGTGGGG
GCCATTATCGGGCTGATGCTGCTGCGCTGGCGCAATGCAAAAACCTCGACGCCGATCCCTTTCGGTCCCTATCTGGCCAT
TGCCGGCTGGATTGCGTTGCTCTGGGGTGGTCAAATAACCGACCTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.579	94.138	0.514
pilD	Vibrio campbellii strain DS40M4	52.015	94.138	0.49
pilD	Acinetobacter baumannii D1279779	48.561	95.862	0.466
pilD	Acinetobacter nosocomialis M2	48.561	95.862	0.466
pilD	Neisseria gonorrhoeae MS11	50.775	88.966	0.452