Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BST96_RS02260 Genome accession   NZ_CP019343
Coordinates   492262..493479 (+) Length   405 a.a.
NCBI ID   WP_085757126.1    Uniprot ID   A0A1X9N9C3
Organism   Oceanicoccus sagamiensis strain NBRC 107125     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 487262..498479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BST96_RS02245 (BST96_02245) - 487586..489547 (-) 1962 WP_085757123.1 hypothetical protein -
  BST96_RS02250 (BST96_02250) - 489886..490326 (+) 441 WP_085757124.1 pilin -
  BST96_RS02255 (BST96_02255) pilB 490549..492258 (+) 1710 WP_085757125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BST96_RS02260 (BST96_02260) pilC 492262..493479 (+) 1218 WP_085757126.1 type II secretion system F family protein Machinery gene
  BST96_RS02265 (BST96_02265) pilD 493492..494376 (+) 885 WP_085757127.1 prepilin peptidase Machinery gene
  BST96_RS02270 (BST96_02270) coaE 494438..495049 (+) 612 WP_085757128.1 dephospho-CoA kinase -
  BST96_RS02275 (BST96_02275) - 495039..495239 (+) 201 WP_085757129.1 DNA gyrase inhibitor YacG -
  BST96_RS02280 (BST96_02280) - 495298..495747 (-) 450 WP_085757130.1 hypothetical protein -
  BST96_RS02285 (BST96_02285) - 496015..496962 (+) 948 WP_085757131.1 pentapeptide repeat-containing protein -
  BST96_RS02290 (BST96_02290) - 497078..497683 (+) 606 WP_157117817.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43565.08 Da        Isoelectric Point: 7.9911

>NTDB_id=214948 BST96_RS02260 WP_085757126.1 492262..493479(+) (pilC) [Oceanicoccus sagamiensis strain NBRC 107125]
MATATTKTSIYTWQGIDKQGRTTKGESSGASQAVVKAQLRKQGITPKTVKKKPKPLFSSKKPITPADISIFTRQLATMMK
AGVPLVQSFDIVAEGLDNPSMAELVITIKNEVASGSGFATAISKHPNQFDELYCNLVASGEQSGTLETMLDRVATYKEKS
EALKAKIKKAMTYPIAVLAVAAIVTGILLVKVIPQFAESFANFGSELPAFTQMVVALSEWVQEWWLVIVVAIVAAIFLFK
EAVKRSPAVALAVDKAALKAPVIGEIVFHSIIARFARTLATTFSAGVPLVDALEAVSGTAGNIIYTDAIKRIREDVLTGQ
QLYTSIRSTELFPNMLLQMVSIGEQSGALDEMLEKVAIHYEEAVDNSVDNLTALLEPIIMSFLGVVVGGLMIAMYLPIFM
MGAAV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=214948 BST96_RS02260 WP_085757126.1 492262..493479(+) (pilC) [Oceanicoccus sagamiensis strain NBRC 107125]
ATGGCAACAGCAACAACAAAAACCAGCATTTATACCTGGCAGGGTATCGATAAGCAGGGCCGAACCACCAAAGGTGAAAG
TAGCGGCGCCAGTCAAGCTGTCGTAAAAGCGCAGCTGCGCAAACAGGGGATTACCCCCAAGACCGTCAAGAAAAAGCCCA
AGCCACTGTTTTCCAGCAAGAAACCGATCACCCCTGCTGATATTTCAATATTTACCCGGCAATTGGCCACCATGATGAAG
GCCGGTGTACCTCTGGTACAGAGCTTCGATATTGTGGCTGAAGGTCTGGATAACCCCAGCATGGCGGAGCTGGTTATCAC
GATTAAAAATGAGGTGGCGTCAGGCTCCGGCTTTGCCACAGCCATCAGCAAACACCCCAATCAATTTGATGAGCTGTATT
GCAACTTAGTCGCCTCAGGCGAGCAGTCCGGTACGCTCGAAACCATGCTAGACCGAGTGGCTACCTACAAAGAAAAATCT
GAAGCGTTAAAAGCAAAAATCAAAAAAGCAATGACCTACCCTATTGCCGTTTTGGCGGTAGCTGCCATCGTAACAGGTAT
TTTATTAGTCAAAGTTATCCCTCAGTTTGCCGAATCTTTTGCTAATTTTGGTTCTGAACTTCCCGCCTTTACCCAAATGG
TTGTAGCCCTCTCTGAATGGGTACAGGAATGGTGGCTAGTCATTGTTGTCGCCATAGTTGCCGCTATATTTTTATTCAAA
GAAGCCGTGAAACGATCTCCCGCTGTTGCTTTGGCAGTAGATAAAGCAGCGCTAAAGGCTCCTGTTATCGGTGAAATTGT
CTTCCACTCTATCATTGCCCGTTTTGCCAGAACGCTCGCAACTACCTTTTCTGCGGGTGTACCTCTAGTAGATGCGCTGG
AAGCCGTATCAGGTACAGCCGGCAATATTATCTATACTGACGCCATCAAACGGATTCGCGAAGATGTTCTGACGGGGCAG
CAACTTTATACCTCCATTCGCAGTACTGAGCTGTTCCCCAATATGCTGTTACAAATGGTTTCCATCGGTGAGCAGTCCGG
TGCGCTGGATGAAATGCTGGAAAAAGTCGCTATCCACTATGAAGAAGCGGTAGACAACTCAGTCGATAACCTGACAGCTT
TACTTGAACCTATTATTATGAGTTTCTTGGGTGTCGTTGTCGGTGGCCTAATGATCGCCATGTACCTGCCAATCTTTATG
ATGGGCGCCGCCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9N9C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.975

100

0.62
  pilC Acinetobacter baumannii D1279779

58.69

98.025

0.575
  pilC Acinetobacter baylyi ADP1

55.419

100

0.556
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria gonorrhoeae MS11

46.597

94.321

0.44
  pilG Neisseria meningitidis 44/76-A

46.597

94.321

0.44
  pilC Vibrio cholerae strain A1552

44.11

98.519

0.435
  pilC Vibrio campbellii strain DS40M4

42.5

98.765

0.42

Multiple sequence alignment