Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FORC53_RS02910 Genome accession   NZ_CP019290
Coordinates   581403..582629 (-) Length   408 a.a.
NCBI ID   WP_045618629.1    Uniprot ID   A0AAN1PMC1
Organism   Vibrio vulnificus strain FORC_053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 576403..587629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS02870 (FORC53_0503) rpsP 576575..576823 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  FORC53_RS02875 (FORC53_0504) rimM 576839..577387 (+) 549 WP_011079542.1 ribosome maturation factor RimM -
  FORC53_RS02880 (FORC53_0505) trmD 577415..578164 (+) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FORC53_RS02885 (FORC53_0506) rplS 578206..578559 (+) 354 WP_011079544.1 50S ribosomal protein L19 -
  FORC53_RS02890 yacG 578800..578994 (-) 195 WP_118893299.1 DNA gyrase inhibitor YacG -
  FORC53_RS02895 (FORC53_0507) zapD 579057..579797 (-) 741 WP_011079546.1 cell division protein ZapD -
  FORC53_RS02900 (FORC53_0508) coaE 579830..580438 (-) 609 WP_017789873.1 dephospho-CoA kinase -
  FORC53_RS02905 (FORC53_0509) pilD 580440..581309 (-) 870 WP_118893301.1 prepilin peptidase Machinery gene
  FORC53_RS02910 (FORC53_0510) pilC 581403..582629 (-) 1227 WP_045618629.1 type II secretion system F family protein Machinery gene
  FORC53_RS02915 (FORC53_0511) pilB 582677..584365 (-) 1689 WP_118894060.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC53_RS02920 (FORC53_0512) - 584381..584821 (-) 441 WP_118893302.1 pilin -
  FORC53_RS02925 (FORC53_0513) nadC 585044..585931 (-) 888 WP_065090099.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FORC53_RS02930 (FORC53_0514) ampD 586024..586596 (+) 573 WP_072608922.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45253.53 Da        Isoelectric Point: 10.3244

>NTDB_id=214589 FORC53_RS02910 WP_045618629.1 581403..582629(-) (pilC) [Vibrio vulnificus strain FORC_053]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=214589 FORC53_RS02910 WP_045618629.1 581403..582629(-) (pilC) [Vibrio vulnificus strain FORC_053]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACAGAGCTTGAAGTGCGTGACAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTTTTCACGAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTTAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCAGGTACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAGGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGCGTCTC
TTATTTAATGCTGACTCAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCTGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCTTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCCATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGAGG
GGTCTTATCCAAAGCAGCGATTGCCAAATTTAGCCGCACATTAGCCACCAGCTTCAGTGCGGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCTGCC
GGGATGCCAATGTACATCGCCATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.5

98.039

0.77
  pilC Vibrio campbellii strain DS40M4

74.813

98.284

0.735
  pilC Pseudomonas stutzeri DSM 10701

41.337

99.02

0.409
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baumannii D1279779

39.756

100

0.4
  pilC Acinetobacter baylyi ADP1

40.602

97.794

0.397
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment