Detailed information NTG0214588

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FORC53_RS02905
• Genome accession: NZ_CP019290
• Coordinates: 580440..581309 (-)
• Length: 289 a.a.
• NCBI ID: WP_118893301.1
• Uniprot ID: A0AAN1PLI4
• Organism: Vibrio vulnificus strain FORC_053
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 575440..586309

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC53_RS02870 (FORC53_0503)	rpsP	576575..576823 (+)	249	WP_011079541.1	30S ribosomal protein S16	-
FORC53_RS02875 (FORC53_0504)	rimM	576839..577387 (+)	549	WP_011079542.1	ribosome maturation factor RimM	-
FORC53_RS02880 (FORC53_0505)	trmD	577415..578164 (+)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FORC53_RS02885 (FORC53_0506)	rplS	578206..578559 (+)	354	WP_011079544.1	50S ribosomal protein L19	-
FORC53_RS02890	yacG	578800..578994 (-)	195	WP_118893299.1	DNA gyrase inhibitor YacG	-
FORC53_RS02895 (FORC53_0507)	zapD	579057..579797 (-)	741	WP_011079546.1	cell division protein ZapD	-
FORC53_RS02900 (FORC53_0508)	coaE	579830..580438 (-)	609	WP_017789873.1	dephospho-CoA kinase	-
FORC53_RS02905 (FORC53_0509)	pilD	580440..581309 (-)	870	WP_118893301.1	prepilin peptidase	Machinery gene
FORC53_RS02910 (FORC53_0510)	pilC	581403..582629 (-)	1227	WP_045618629.1	type II secretion system F family protein	Machinery gene
FORC53_RS02915 (FORC53_0511)	pilB	582677..584365 (-)	1689	WP_118894060.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FORC53_RS02920 (FORC53_0512)	-	584381..584821 (-)	441	WP_118893302.1	pilin	-
FORC53_RS02925 (FORC53_0513)	nadC	585044..585931 (-)	888	WP_065090099.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32263.32 Da
• Isoelectric Point: 6.4630

>NTDB_id=214588 FORC53_RS02905 WP_118893301.1 580440..581309(-) (pilD) [Vibrio vulnificus strain FORC_053]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYNITPPTETLTLSTPRSSCPSCHAPIRVR
DNIPIFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGITLALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLMGA

Nucleotide

• Length: 870 bp

>NTDB_id=214588 FORC53_RS02905 WP_118893301.1 580440..581309(-) (pilD) [Vibrio vulnificus strain FORC_053]
ATGGACGCGTTACAGTACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGCCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAACA
TCACACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGCCCTTCGTGCCATGCCCCAATACGAGTTCGA
GATAATATTCCTATCTTTAGTTGGTTAGCACTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTCTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACACTGCCG
CTGACGTGGGCAGGCATCACGCTAGCGTTACTAGAGATAAGCCCAGTATCTCTGCAGGATTCAGTGATCGGTGCGATGGC
AGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGGAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTTTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCCGATTGCAAAAGCAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATGGGGGCATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.125	100	0.761
pilD	Vibrio cholerae strain A1552	71.181	99.654	0.709
pilD	Acinetobacter nosocomialis M2	54.348	95.502	0.519
pilD	Acinetobacter baumannii D1279779	53.986	95.502	0.516
pilD	Neisseria gonorrhoeae MS11	48.364	95.156	0.46