Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RA876_RS14490 Genome accession   NZ_CP019240
Coordinates   3005070..3006296 (+) Length   408 a.a.
NCBI ID   WP_075584756.1    Uniprot ID   A0A1Q8YK95
Organism   Rhodoferax antarcticus strain DSMZ24876     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3000070..3011296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA876_RS14475 (RA876_14475) - 3000607..3002076 (-) 1470 WP_083633696.1 pitrilysin family protein -
  RA876_RS14480 (RA876_14480) ftsY 3002106..3003227 (+) 1122 WP_075584754.1 signal recognition particle-docking protein FtsY -
  RA876_RS14485 (RA876_14485) pilB 3003316..3005049 (+) 1734 WP_075584755.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RA876_RS14490 (RA876_14490) pilC 3005070..3006296 (+) 1227 WP_075584756.1 type II secretion system F family protein Machinery gene
  RA876_RS14495 (RA876_14495) - 3006361..3006672 (-) 312 WP_075584757.1 DUF883 family protein -
  RA876_RS14500 (RA876_14500) - 3006902..3007759 (+) 858 WP_075584758.1 A24 family peptidase -
  RA876_RS14505 (RA876_14505) coaE 3007763..3008407 (+) 645 WP_075584759.1 dephospho-CoA kinase -
  RA876_RS14510 (RA876_14510) zapD 3008404..3009159 (+) 756 WP_075584760.1 cell division protein ZapD -
  RA876_RS14515 (RA876_14515) - 3009170..3009385 (+) 216 WP_075584761.1 DNA gyrase inhibitor YacG -
  RA876_RS14520 (RA876_14520) - 3009462..3010226 (-) 765 WP_075584762.1 sulfite exporter TauE/SafE family protein -
  RA876_RS14525 (RA876_14525) - 3010247..3010681 (+) 435 WP_075584763.1 DUF1841 family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44826.81 Da        Isoelectric Point: 9.7684

>NTDB_id=214355 RA876_RS14490 WP_075584756.1 3005070..3006296(+) (pilC) [Rhodoferax antarcticus strain DSMZ24876]
MATEKAKRKAVVKEFVFEWEGKDRNGKQVRGETRAGGENQVTAALRRQGVLPTKIKKRRMSAGKRIRPKDIAIFTRQLAT
MMKAGVPLLQAFDIVGRGNPNPSVTRLLNDIRNDVETGTSLSTAFRKYPLHFDALYCNLVEAGEAAGILDQLLDRLAVYM
EKTEAMKSKIKSALMYPIAVLIVAFVVTAVIMIFVVPSFKEVFSSFGADLPAPTLVVIAMSEFFVAYWWLIFGGLGGGFY
FFMQAWQRNKKVQIFMDKLMLKMPVFGVLVEKSSIARWTRTLSTMFAAGVPLVEALDSVGGAAGNWVYENATIKIQQEVS
TGTALTTAMTNVNLFPSMVLQMCAIGEESGSIDHMLGKAADFYESEVDDMVAGISSLMEPIIIVILGTVIGGIVVAMYLP
IFKLGQVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=214355 RA876_RS14490 WP_075584756.1 3005070..3006296(+) (pilC) [Rhodoferax antarcticus strain DSMZ24876]
ATGGCAACTGAGAAAGCAAAACGGAAGGCAGTCGTCAAGGAATTTGTCTTCGAGTGGGAAGGCAAAGACCGCAATGGCAA
GCAGGTGCGTGGGGAAACGCGTGCCGGTGGCGAAAATCAGGTGACCGCTGCGCTGCGCCGCCAAGGCGTGCTGCCCACCA
AGATCAAGAAGCGCCGCATGAGCGCGGGCAAGCGCATCAGGCCCAAAGATATTGCCATTTTCACGCGCCAACTCGCCACC
ATGATGAAGGCCGGCGTGCCATTGCTGCAAGCGTTTGACATTGTGGGCCGCGGCAACCCTAACCCCAGCGTGACCCGTCT
GCTCAACGACATTCGCAACGATGTGGAAACCGGCACCTCACTCAGCACGGCGTTTCGCAAATACCCGCTGCACTTTGATG
CCCTGTACTGCAACCTGGTCGAAGCCGGTGAAGCCGCCGGTATTCTGGACCAGTTGCTGGACCGCCTGGCGGTGTACATG
GAAAAAACCGAGGCAATGAAGTCGAAGATCAAGTCCGCCCTGATGTACCCGATTGCGGTGTTAATCGTGGCTTTTGTGGT
CACGGCGGTGATCATGATCTTTGTGGTGCCCTCGTTCAAGGAAGTGTTCAGCAGCTTTGGTGCCGACCTGCCCGCCCCGA
CGCTGGTGGTGATTGCCATGAGCGAGTTTTTTGTGGCCTATTGGTGGCTGATTTTTGGCGGCCTGGGAGGCGGCTTTTAC
TTTTTCATGCAGGCCTGGCAGCGCAACAAAAAGGTGCAGATCTTCATGGACAAGCTGATGCTGAAAATGCCAGTTTTTGG
TGTGTTGGTGGAAAAATCTAGCATCGCCCGCTGGACGCGCACGCTCTCCACCATGTTTGCGGCTGGGGTGCCGCTGGTGG
AGGCGCTGGACTCGGTGGGCGGCGCGGCGGGTAATTGGGTGTATGAGAACGCCACCATCAAAATCCAGCAGGAAGTCTCC
ACCGGCACCGCGCTCACAACCGCCATGACTAACGTCAACCTGTTCCCGTCGATGGTGCTGCAGATGTGCGCCATTGGCGA
AGAATCCGGCTCCATTGACCACATGCTGGGCAAAGCGGCGGACTTTTACGAGTCTGAGGTGGATGACATGGTGGCCGGCA
TCTCCAGCCTAATGGAGCCCATCATCATTGTGATTCTGGGTACCGTCATTGGCGGCATCGTCGTGGCCATGTACCTGCCC
ATCTTCAAGCTCGGTCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q8YK95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.5

98.039

0.534
  pilG Neisseria gonorrhoeae MS11

52.273

97.059

0.507
  pilC Legionella pneumophila strain ERS1305867

51.759

97.549

0.505
  pilG Neisseria meningitidis 44/76-A

52.02

97.059

0.505
  pilC Acinetobacter baylyi ADP1

50.251

97.549

0.49
  pilC Acinetobacter baumannii D1279779

50.126

97.304

0.488
  pilC Thermus thermophilus HB27

39.048

100

0.402
  pilC Vibrio cholerae strain A1552

41.206

97.549

0.402
  pilC Vibrio campbellii strain DS40M4

38.75

98.039

0.38

Multiple sequence alignment