Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CS058_RS00105 Genome accession   NZ_CP024477
Coordinates   21971..23065 (+) Length   364 a.a.
NCBI ID   WP_099887515.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 12939     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 16971..28065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS058_RS00085 rsmB 17866..19170 (-) 1305 WP_034026439.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CS058_RS00090 fmt 19167..20111 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  CS058_RS00095 def 20166..20672 (-) 507 WP_003097293.1 peptide deformylase -
  CS058_RS00100 tsaP 20811..21836 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CS058_RS00105 dprA 21971..23065 (+) 1095 WP_099887515.1 DNA-processing protein DprA Machinery gene
  CS058_RS00110 - 23106..23663 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  CS058_RS00115 - 23673..24650 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  CS058_RS00120 hemF 24841..25758 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  CS058_RS00125 aroE 25816..26640 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  CS058_RS00130 - 26751..27737 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 37832.32 Da        Isoelectric Point: 7.0743

>NTDB_id=212912 CS058_RS00105 WP_099887515.1 21971..23065(+) (dprA) [Pseudomonas aeruginosa strain 12939]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWGDPGYPALLAEVAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGI
DGAAHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEAS
PASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQQPHPLLALLRA
APYTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=212912 CS058_RS00105 WP_099887515.1 21971..23065(+) (dprA) [Pseudomonas aeruginosa strain 12939]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTCCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGGCGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGAAGTCGCCGATGCCCCGCCGCT
GCTGTACGTCGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGTGCCAGCCCCGCCG
GGCTGGGCACCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATC
GATGGCGCCGCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTA
TCCGCGCCGCCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCC
CGCCGCTGCCGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGT
CCCGCCAGCGGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATCCCGGGCTCCATCCA
CCATCCCGGCGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAG
CACTGCGCGGCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCTGCGCAGCAGCCCCACCCTTTGCTGGCGCTGCTGCGCGCC
GCGCCCTATACCAGCGAAGGCCTGGCTGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGA
ACTCGACGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(301-357)

DNA recombination-mediator protein A (DNA_processg_A)

(81-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.164

100

0.442
  dprA Legionella pneumophila strain ERS1305867

42.737

98.352

0.42
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.854

97.802

0.409
  dprA Vibrio cholerae strain A1552

46.405

84.066

0.39
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

46.405

84.066

0.39
  dprA Acinetobacter baumannii D1279779

37.26

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

44.118

84.066

0.371
  dprA Glaesserella parasuis strain SC1401

46.367

79.396

0.368
  dprA Neisseria gonorrhoeae MS11

43.791

84.066

0.368
  dprA Neisseria meningitidis MC58

45.578

80.769

0.368
  dprA Neisseria meningitidis strain C311

45.578

80.769

0.368