Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BVL33_RS02830 Genome accession   NZ_CP019041
Coordinates   583920..586055 (+) Length   711 a.a.
NCBI ID   WP_167543108.1    Uniprot ID   A0A8F6R4C3
Organism   Acinetobacter junii strain 65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 578920..591055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL33_RS02810 (BVL33_02810) pilM 580892..581950 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  BVL33_RS02815 (BVL33_02815) pilN 581950..582594 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  BVL33_RS02820 (BVL33_02820) pilO 582591..583331 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  BVL33_RS02825 (BVL33_02825) pilP 583331..583858 (+) 528 WP_075696027.1 pilus assembly protein PilP Machinery gene
  BVL33_RS02830 (BVL33_02830) pilQ 583920..586055 (+) 2136 WP_167543108.1 type IV pilus secretin PilQ family protein Machinery gene
  BVL33_RS02835 (BVL33_02835) aroK 586075..586635 (+) 561 WP_004909618.1 shikimate kinase AroK -
  BVL33_RS02840 (BVL33_02840) aroB 586656..587738 (+) 1083 WP_075696029.1 3-dehydroquinate synthase -
  BVL33_RS02845 (BVL33_02845) - 587755..588633 (+) 879 WP_075696030.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77099.32 Da        Isoelectric Point: 5.5093

>NTDB_id=212803 BVL33_RS02830 WP_167543108.1 583920..586055(+) (pilQ) [Acinetobacter junii strain 65]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVSTNEASSVNVAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPTLISNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTLGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQSYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVTELIKAEEDEAKAIAQSVKLAPLQTEYIQLSYAKAADIEKLITQGKNSSANSNQGSSGSSLGDSV
GSLLSPRGTVSIDPRTNTLIINDTSQKIDQIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGISSNNDLL
VGGSDTTLWNLRDPEKDEDTGGWKYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKV
LTADKQAAKIESGTQIPYSSSTGAGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPGNPTPTGQLTINKNTI
DTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=212803 BVL33_RS02830 WP_167543108.1 583920..586055(+) (pilQ) [Acinetobacter junii strain 65]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGGGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGGCTCAGCAGAACTTAAAGCAAACGTCTATT
CCTGTTTCAACCAATGAGGCAAGTTCCGTCAATGTGGCTGCAGATGATCAGCGTGCACGTTTGATTGTAAATTTAAAAGA
CTCGGGTGCTTTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCTGCAAAACCAACATTAATCAGTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGTGTTTCCAATATTGGTTTTCAAAGAGGAAATCAAGGTGAGGGGTTA
GTTGTTATTGATTTATTGGGAGGTAATACACCAGTAGATGTACAACAACAGGGGAGTAAAATTGTTGTTCGCACTCTTGG
AAATAAAATCCCAACTCACTTGGCACGTCGTTTAAATACTAATGATTTTGCGACCCCAGTAGCAAGTATTGATGCTTATA
ACGACAAAGGAAATGGGGTTATTACTATTCAATCTGCAGGTAGCTATGAGTACATGGCTTATCAGGCAGAGAACAAACTT
ACAATTAGTTTAAAAAGACCAGAAGATAAGTCACCGAATAAAGCTAAACCACAAAGCTATACTGGAAATAAAATTTCATT
AGATTTCCAAGATATCGAGGTTCGCCGTGTTTTGCAATTATTAGCAGACTTTACCGGAATTAATATGGTTGCTGCTGATA
CTGTACAGGGAAATATTACACTACGTCTTAAAGACGTTCCTTGGGATCAGGCTCTTGATATCGTTTTAAAAACAAAAAAC
TTGGATAAGCGTCGTAATGGAAATGTAATTTGGATTGCACCAGTTACTGAGCTAATCAAAGCGGAAGAGGATGAAGCGAA
AGCAATCGCTCAAAGTGTGAAACTTGCACCTTTGCAAACAGAGTATATTCAATTGAGTTATGCGAAAGCGGCAGATATTG
AAAAACTAATTACTCAGGGTAAAAATAGCTCAGCTAATAGTAATCAGGGAAGTAGTGGATCCTCTTTAGGTGATAGCGTA
GGTAGTTTATTGAGCCCACGCGGAACGGTTTCGATTGACCCACGTACAAATACTTTGATTATAAATGATACATCTCAAAA
GATTGATCAGATCCGTAAGATGATCGATTTGCTTGATGTATCGGTTAAACAAGTGATGATTGAAGCACGTATTGTGCGTG
CAAGTACAGACTTTACCAAAGAGATGGGGGTAAAGTGGGGGATATTGTCGCAAGGTATATCTTCAAACAATGATCTTCTA
GTTGGTGGTAGTGATACAACTTTATGGAATCTCCGTGATCCAGAAAAAGATGAGGATACAGGTGGTTGGAAATATGATAT
TGAACGTCCAGATAACCTAAATGTAAATTTAGGTGCTGTAACTCCTGGGGCAAGTCGTATTGCTTTTGGTTTGATTAGTC
TTTCAGATTTTATGTTGGACTTAGAGTTGTCTGCAGTTCAAGCTGATGGTTACGGTGAAGTGATTTCGACTCCGAAAGTA
CTGACTGCTGATAAGCAAGCTGCAAAAATTGAATCAGGGACTCAGATTCCTTACTCATCTTCTACTGGGGCGGGAGCGAA
TGCAGTTCCTAAAACAGAGTTTATTGATGCGACATTGAGTTTGGATGTAACTCCGAGTATCACACCTGAAGGTAAAGTGA
TGATGAAATTAAACATCACCAAAGACTCACCTGGAAATCCAACACCTACAGGGCAGTTGACGATTAATAAAAACACAATT
GATACCAATGTTGTGGTTGATAATGGTGAAACTGTTGTTCTTGGTGGAATCTTCGAGCAAGAAAATATTAATTCTCAGAC
CAAAGTTCCATTCTTGGGTGATTTACCTTATGTTGGGAAATTATTCCGCAGAGAGTCTAAACAAGACAATAAACGCGAGT
TGCTTATTTTTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(545-703)

AMIN domain (AMIN)

(37-122)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-444)

Secretin and TonB N terminus short domain (STN)

(292-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.552

100

0.769
  pilQ Acinetobacter baumannii strain A118

75.552

100

0.769
  comQ Acinetobacter baylyi ADP1

73.574

100

0.744
  pilQ Pseudomonas aeruginosa PAK

41.227

98.594

0.406
  pilQ Legionella pneumophila strain ERS1305867

39.407

94.937

0.374
  pilQ Legionella pneumophila strain Lp02

39.227

94.655

0.371

Multiple sequence alignment