Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   BVL33_RS02820 Genome accession   NZ_CP019041
Coordinates   582591..583331 (+) Length   246 a.a.
NCBI ID   WP_075696026.1    Uniprot ID   -
Organism   Acinetobacter junii strain 65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 577591..588331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVL33_RS02805 (BVL33_02805) ponA 578150..580729 (-) 2580 WP_075696025.1 penicillin-binding protein PBP1a -
  BVL33_RS02810 (BVL33_02810) pilM 580892..581950 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  BVL33_RS02815 (BVL33_02815) pilN 581950..582594 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  BVL33_RS02820 (BVL33_02820) pilO 582591..583331 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  BVL33_RS02825 (BVL33_02825) pilP 583331..583858 (+) 528 WP_075696027.1 pilus assembly protein PilP Machinery gene
  BVL33_RS02830 (BVL33_02830) pilQ 583920..586055 (+) 2136 WP_167543108.1 type IV pilus secretin PilQ family protein Machinery gene
  BVL33_RS02835 (BVL33_02835) aroK 586075..586635 (+) 561 WP_004909618.1 shikimate kinase AroK -
  BVL33_RS02840 (BVL33_02840) aroB 586656..587738 (+) 1083 WP_075696029.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27775.32 Da        Isoelectric Point: 4.6196

>NTDB_id=212801 BVL33_RS02820 WP_075696026.1 582591..583331(+) (pilO) [Acinetobacter junii strain 65]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASQDTTKKSDIPVVNYSVKAKTYRYVGADDAANTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=212801 BVL33_RS02820 WP_075696026.1 582591..583331(+) (pilO) [Acinetobacter junii strain 65]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTT
TAGCTGTTTTAGCGCTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGTATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAATTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTGCCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTGAATTCGGGGTTGAAGTTTAAGAATATTCGCCTAGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATTGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACGGGTATTGCGGCATTGCCTCGAATTGTAACTTT
ACATGATTTCACGGTTGAAGCATCACAAGATACGACGAAGAAGTCAGATATTCCTGTTGTGAATTACTCCGTTAAGGCAA
AGACCTACCGTTATGTGGGTGCTGATGATGCAGCAAATACTGAGGTTGGAGCGGCGGTACCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.065

100

0.724
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683

Multiple sequence alignment