Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | A388_RS03650 | Genome accession | NZ_CP024418 |
| Coordinates | 708703..709218 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain A388 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 703703..714218
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A388_RS03625 (A388_00692) | - | 704249..705892 (+) | 1644 | WP_005136278.1 | nitrite/sulfite reductase | - |
| A388_RS03630 (A388_00693) | - | 705885..706370 (+) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| A388_RS03635 (A388_00694) | - | 706453..706806 (+) | 354 | WP_000457783.1 | DMT family transporter | - |
| A388_RS03640 (A388_00695) | - | 706849..707292 (-) | 444 | WP_001176585.1 | VOC family protein | - |
| A388_RS03645 (A388_00696) | - | 707419..708594 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| A388_RS03650 (A388_00697) | fimT | 708703..709218 (-) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| A388_RS03655 (A388_00698) | omp38 | 709598..710659 (+) | 1062 | WP_000777885.1 | outer membrane protein Omp38 | - |
| A388_RS19830 (A388_00699) | - | 710782..710925 (-) | 144 | WP_162138624.1 | hypothetical protein | - |
| A388_RS03660 (A388_00700) | - | 710944..712149 (-) | 1206 | WP_000512708.1 | RtcB family protein | - |
| A388_RS03665 (A388_00701) | - | 712427..713887 (-) | 1461 | WP_000004974.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=212802 A388_RS03650 WP_000477151.1 708703..709218(-) (fimT) [Acinetobacter baumannii strain A388]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=212802 A388_RS03650 WP_000477151.1 708703..709218(-) (fimT) [Acinetobacter baumannii strain A388]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |