Detailed information NTG0212713

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: BVG12_RS25150
• Genome accession: NZ_CP019038
• Coordinates: 5159455..5160693 (-)
• Length: 412 a.a.
• NCBI ID: WP_075794771.1
• Uniprot ID: -
• Organism: Massilia putida strain 6NM-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5154455..5165693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVG12_RS25140	-	5154560..5157568 (+)	3009	WP_075794769.1	TonB-dependent receptor	-
BVG12_RS25145	-	5157588..5159441 (+)	1854	WP_169926838.1	beta-galactosidase	-
BVG12_RS25150	pilC	5159455..5160693 (-)	1239	WP_075794771.1	type II secretion system F family protein	Machinery gene
BVG12_RS25155	pilB	5160704..5162437 (-)	1734	WP_075794772.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BVG12_RS25160	-	5162684..5163991 (-)	1308	WP_075794773.1	HlyC/CorC family transporter	-
BVG12_RS25165	-	5164078..5164893 (-)	816	WP_075794774.1	slipin family protein	-
BVG12_RS25170	-	5164898..5165263 (-)	366	WP_075794775.1	hypothetical protein	-

Sequence

Protein

• Length: 412 a.a.
• Molecular weight: 45101.33 Da
• Isoelectric Point: 10.0990

>NTDB_id=212713 BVG12_RS25150 WP_075794771.1 5159455..5160693(-) (pilC) [Massilia putida strain 6NM-7]
MATTSAPARRAPNAQVKEYIFAWEGKDKTGKTVRGEMRAGGETIVNVTLRRQGIMVTKVKKKVYRSGKKIQDKDLTLFTR
QLATMMRAGVPLLQSFDIVGKGHANPSMSKLIMDLRADIETGTSLNNAFRKYPLYFDPLFCNLVGAGEQAGILEDLLTRL
AIYKEKTLALKAKIKGALMYPCAILAIAFVVTAVIMIWVVPAFKSVFSSFGANLPAPTLIVMGISDFVVQWWYLIFGSLF
GALYFFFQAWRRSLKVQQAMDRILLRIPVFGDVIRKGTIARWTRTLSTMFAAGVPLVEALDSVGGAAGNNVYLEATKKIQ
TEVSTGTSLTVAMQNANVFPSMVTQMVAIGEESGALDGMLGKVADFYEEEVDEAVKTLSSLMEPMIMVILGVLIGGLVVA
MYLPIFKLGSVV

Nucleotide

• Length: 1239 bp

>NTDB_id=212713 BVG12_RS25150 WP_075794771.1 5159455..5160693(-) (pilC) [Massilia putida strain 6NM-7]
ATGGCAACGACATCCGCTCCGGCACGCCGCGCTCCCAACGCGCAGGTCAAGGAATACATCTTCGCCTGGGAAGGCAAGGA
CAAGACCGGCAAGACCGTACGCGGCGAAATGCGCGCCGGCGGCGAGACCATCGTCAACGTGACCCTGCGCCGCCAGGGCA
TCATGGTCACCAAGGTCAAGAAGAAGGTGTATCGCAGCGGCAAGAAGATCCAGGACAAGGACCTGACCCTGTTCACGCGC
CAGCTGGCCACGATGATGAGAGCCGGCGTCCCGCTGCTGCAATCGTTCGACATCGTCGGCAAAGGCCACGCGAACCCGTC
GATGTCCAAGCTGATCATGGACTTGCGCGCCGACATCGAGACGGGCACCAGCTTGAACAACGCCTTCCGCAAATACCCGC
TGTACTTCGACCCGCTGTTCTGCAACCTCGTCGGCGCCGGCGAGCAGGCCGGTATTCTCGAAGACCTGCTGACGCGTCTG
GCGATCTACAAGGAAAAGACGCTCGCGCTGAAGGCCAAGATCAAGGGCGCGCTGATGTACCCGTGCGCGATCCTCGCGAT
CGCCTTCGTCGTCACGGCCGTGATCATGATCTGGGTCGTGCCCGCGTTCAAATCCGTGTTCTCCAGCTTCGGCGCGAACC
TGCCGGCCCCGACCTTGATCGTGATGGGCATCTCCGATTTCGTCGTGCAATGGTGGTACCTCATCTTCGGCTCGCTCTTC
GGCGCCCTGTACTTCTTCTTCCAGGCGTGGCGCCGGTCGCTCAAGGTGCAGCAAGCGATGGATCGCATCTTGTTGCGGAT
CCCCGTGTTCGGCGACGTGATCCGCAAGGGCACGATCGCCCGCTGGACCCGCACGCTGTCCACGATGTTCGCCGCCGGCG
TGCCGCTCGTCGAAGCCCTGGACTCCGTTGGCGGCGCCGCCGGCAACAATGTCTATCTGGAAGCGACGAAAAAAATCCAG
ACGGAAGTCAGCACGGGCACGAGCCTGACGGTCGCGATGCAGAACGCCAACGTCTTCCCGAGCATGGTCACGCAAATGGT
CGCCATCGGCGAAGAATCCGGCGCGCTGGACGGCATGCTGGGCAAGGTGGCCGACTTCTACGAGGAAGAAGTGGACGAGG
CCGTCAAGACGCTGTCATCGCTGATGGAACCCATGATCATGGTGATCCTGGGCGTGCTGATCGGTGGCCTCGTCGTGGCC
ATGTATTTGCCGATCTTCAAGCTGGGATCGGTGGTGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (78-201)

• Type II secretion system (T2SS), protein F (T2SSF) (282-404)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	55.5	97.087	0.539
pilC	Legionella pneumophila strain ERS1305867	54.293	96.117	0.522
pilG	Neisseria gonorrhoeae MS11	51.889	96.359	0.5
pilG	Neisseria meningitidis 44/76-A	51.889	96.359	0.5
pilC	Acinetobacter baumannii D1279779	50.63	96.359	0.488
pilC	Acinetobacter baylyi ADP1	50.251	96.602	0.485
pilC	Vibrio cholerae strain A1552	40.05	96.359	0.386
pilC	Vibrio campbellii strain DS40M4	39.303	97.573	0.383