Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BVD86_RS13245 Genome accession   NZ_CP018909
Coordinates   2755861..2757087 (+) Length   408 a.a.
NCBI ID   WP_101664190.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XJ88     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2750861..2762087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD86_RS13210 (BVD86_13260) rimP 2751532..2752056 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  BVD86_RS13230 (BVD86_13280) secG 2752694..2753023 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  BVD86_RS13235 (BVD86_13285) tpiA 2753036..2753830 (-) 795 WP_101664188.1 triose-phosphate isomerase -
  BVD86_RS13240 (BVD86_13290) pilB 2754122..2755834 (+) 1713 WP_101664189.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BVD86_RS13245 (BVD86_13295) pilC 2755861..2757087 (+) 1227 WP_101664190.1 type II secretion system F family protein Machinery gene
  BVD86_RS13250 (BVD86_13300) pilD 2757087..2757947 (+) 861 WP_032038058.1 prepilin peptidase Machinery gene
  BVD86_RS13255 (BVD86_13305) coaE 2757949..2758545 (+) 597 WP_101664191.1 dephospho-CoA kinase -
  BVD86_RS13260 (BVD86_13310) - 2758542..2759456 (-) 915 WP_101664192.1 DMT family transporter -
  BVD86_RS13265 (BVD86_13315) rlmB 2759492..2760241 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BVD86_RS13270 (BVD86_13320) - 2760344..2760670 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  BVD86_RS13275 (BVD86_13325) - 2760747..2762057 (-) 1311 WP_101664193.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45036.46 Da        Isoelectric Point: 9.8207

>NTDB_id=211757 BVD86_RS13245 WP_101664190.1 2755861..2757087(+) (pilC) [Acinetobacter pittii strain XJ88]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLHFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=211757 BVD86_RS13245 WP_101664190.1 2755861..2757087(+) (pilC) [Acinetobacter pittii strain XJ88]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACC
ATGATGAAAGCAGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCGCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTAGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTCACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAATAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACCGGTCAACAACTCCATTTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTAGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment