Detailed information NTG0211758

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BVD86_RS13250
• Genome accession: NZ_CP018909
• Coordinates: 2757087..2757947 (+)
• Length: 286 a.a.
• NCBI ID: WP_032038058.1
• Uniprot ID: A0A013SYM6
• Organism: Acinetobacter pittii strain XJ88
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2752087..2762947

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVD86_RS13230 (BVD86_13280)	secG	2752694..2753023 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
BVD86_RS13235 (BVD86_13285)	tpiA	2753036..2753830 (-)	795	WP_101664188.1	triose-phosphate isomerase	-
BVD86_RS13240 (BVD86_13290)	pilB	2754122..2755834 (+)	1713	WP_101664189.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BVD86_RS13245 (BVD86_13295)	pilC	2755861..2757087 (+)	1227	WP_101664190.1	type II secretion system F family protein	Machinery gene
BVD86_RS13250 (BVD86_13300)	pilD	2757087..2757947 (+)	861	WP_032038058.1	prepilin peptidase	Machinery gene
BVD86_RS13255 (BVD86_13305)	coaE	2757949..2758545 (+)	597	WP_101664191.1	dephospho-CoA kinase	-
BVD86_RS13260 (BVD86_13310)	-	2758542..2759456 (-)	915	WP_101664192.1	DMT family transporter	-
BVD86_RS13265 (BVD86_13315)	rlmB	2759492..2760241 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
BVD86_RS13270 (BVD86_13320)	-	2760344..2760670 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
BVD86_RS13275 (BVD86_13325)	-	2760747..2762057 (-)	1311	WP_101664193.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32141.67 Da
• Isoelectric Point: 7.1044

>NTDB_id=211758 BVD86_RS13250 WP_032038058.1 2757087..2757947(+) (pilD) [Acinetobacter pittii strain XJ88]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=211758 BVD86_RS13250 WP_032038058.1 2757087..2757947(+) (pilD) [Acinetobacter pittii strain XJ88]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAGCCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAGTATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTATG
GCGACTTTAAACTGCTTGCTGCCTTAGGTGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCCTATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A013SYM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.154	100	0.962
pilD	Acinetobacter nosocomialis M2	95.804	100	0.958
pilD	Vibrio cholerae strain A1552	54.212	95.455	0.517
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437