Detailed information NTG0210817

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: BUM80_RS04850
• Genome accession: NZ_CP018838
• Coordinates: 915077..915547 (-)
• Length: 156 a.a.
• NCBI ID: WP_000609600.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 11A
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 910077..920547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BUM80_RS04820 (BUM80_04970)	-	910652..911587 (-)	936	WP_000036043.1	manganese-dependent inorganic pyrophosphatase	-
BUM80_RS04825 (BUM80_04975)	-	911658..911957 (-)	300	WP_000349601.1	GIY-YIG nuclease family protein	-
BUM80_RS04830 (BUM80_04980)	-	911947..912696 (-)	750	WP_000390783.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
BUM80_RS04835 (BUM80_04985)	-	912750..913109 (-)	360	WP_000689596.1	S1 RNA-binding domain-containing protein	-
BUM80_RS04840 (BUM80_04990)	-	913111..914511 (-)	1401	WP_000339025.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
BUM80_RS04845 (BUM80_04995)	rpsR	914806..915045 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
BUM80_RS04850 (BUM80_05000)	ssbA	915077..915547 (-)	471	WP_000609600.1	single-stranded DNA-binding protein SsbA	Machinery gene
BUM80_RS04855 (BUM80_05005)	rpsF	915559..915849 (-)	291	WP_001151785.1	30S ribosomal protein S6	-
BUM80_RS04860 (BUM80_05010)	asnS	916002..917345 (-)	1344	WP_000167151.1	asparagine--tRNA ligase	-
BUM80_RS11310	-	917364..917729 (-)	366	WP_000565218.1	VOC family protein	-
BUM80_RS04865 (BUM80_05015)	-	917722..918909 (-)	1188	WP_000777773.1	pyridoxal phosphate-dependent aminotransferase	-
BUM80_RS04870 (BUM80_05020)	-	918906..919394 (-)	489	WP_000747253.1	DUF5590 domain-containing protein	-
BUM80_RS04880 (BUM80_05025)	-	919715..920263 (+)	549	WP_000039617.1	NADPH-dependent FMN reductase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17420.32 Da
• Isoelectric Point: 5.8989

>NTDB_id=210817 BUM80_RS04850 WP_000609600.1 915077..915547(-) (ssbA) [Streptococcus pneumoniae strain 11A]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLERRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=210817 BUM80_RS04850 WP_000609600.1 915077..915547(-) (ssbA) [Streptococcus pneumoniae strain 11A]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGACGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.814	100	0.615
ssb	Latilactobacillus sakei subsp. sakei 23K	53.529	100	0.583
ssbB	Bacillus subtilis subsp. subtilis str. 168	56.731	66.667	0.378
ssbB/cilA	Streptococcus pneumoniae TIGR4	50.427	75	0.378
ssbB/cilA	Streptococcus mitis NCTC 12261	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae Rx1	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae D39	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae R6	49.573	75	0.372
ssbB/cilA	Streptococcus mitis SK321	49.573	75	0.372
ssbB	Streptococcus sobrinus strain NIDR 6715-7	53.211	69.872	0.372