Detailed information NTG0208818

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: BJD11_RS05990
• Genome accession: NZ_CP018467
• Coordinates: 828188..829450 (-)
• Length: 420 a.a.
• NCBI ID: WP_011348340.1
• Uniprot ID: Q3BQ78
• Organism: Xanthomonas euvesicatoria strain LMG930
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 823188..834450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJD11_RS05980 (BJD11_05985)	coaE	826693..827304 (-)	612	WP_011348341.1	dephospho-CoA kinase	-
BJD11_RS05985 (BJD11_05990)	-	827318..828181 (-)	864	WP_008576868.1	A24 family peptidase	-
BJD11_RS05990 (BJD11_05995)	pilC	828188..829450 (-)	1263	WP_011348340.1	type II secretion system F family protein	Machinery gene
BJD11_RS05995 (BJD11_06000)	pilA	829792..830220 (+)	429	WP_011348339.1	pilin	Machinery gene
BJD11_RS06000 (BJD11_06005)	pilB	830378..832087 (+)	1710	WP_039416953.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BJD11_RS06005 (BJD11_06010)	pilR	832302..833756 (-)	1455	WP_011348337.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46224.74 Da
• Isoelectric Point: 10.2689

>NTDB_id=208818 BJD11_RS05990 WP_011348340.1 828188..829450(-) (pilC) [Xanthomonas euvesicatoria strain LMG930]
MSVARNAIKKQTADRSTVQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSIVKLKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMFFVIAGAIVGFVFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1263 bp

>NTDB_id=208818 BJD11_RS05990 WP_011348340.1 828188..829450(-) (pilC) [Xanthomonas euvesicatoria strain LMG930]
ATGTCTGTCGCACGCAACGCCATCAAGAAGCAAACTGCGGATCGTAGCACCGTTCAACAGCTACAGCTGTTCCTTTGGGA
AGGAACTGACAAACGCGGGATCAAGATGAAAGGCGAACAGACTGCTCGCAACATGAACATGTTGCGGGCGGAGCTTCGCC
GCCAGGGTATCAATCCATCGATAGTCAAGCTTAAGCCTAAGCCGCTGTTCGGTGCTGCAGGCAAGAAAATCACGCCAAAA
GACATCGCTTTTTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGGGTGCCGATTGTAGGCTCGCTCGAGATCATCGG
TGAGGGTCACAAAAACCCGCGGATGAAAAAGATGGTGGGTCAAGTGAGAACGGATATCGAGGGAGGCTCCTCCCTTTACG
AATCAATCAGCAGACATCCGGTTCAGTTTGACGAGCTCTACCGAAACCTTGTAAGAGCAGGTGAGGGTGCAGGCGTCCTG
GAGACAGTGCTAGATACGGTTGCCACTTACAAAGAAAATATAGAAGCACTAAAGGGCAAGATCAAAAAGGCCCTATTTTA
TCCAGCCATGGTTATTGCAGTCGCCCTGATTGTCAGTGCCATCCTCCTCATCTTTGTCGTCCCTCAATTTGAGGAGGTTT
TTAAAGGTTTTGGTGCCGAGCTACCTGCTTTTACTCAAATGATTGTGGGAGCCTCACGCTTCATGGTGAGCTATTGGTGG
ATTATGTTCTTCGTCATAGCAGGCGCCATCGTCGGATTTGTCTTTGCTTATAAGCGTTCGCCAAGCATGCAGCACACTAT
GGATAGGCTTATATTGAGAGTGCCTGTCATAGGTCAAATCATGCATAACAGTTCGATTGCGCGTTTCGCGCGTACCACCG
CTGTTACCTTCAAAGCCGGCGTCCCACTGGTAGAGGCATTAGGCATTGTTGCGGGCGCCACTGGGAACCGCGTTTACGAA
GATGCTGTACTCCGCATGCGTGACGACGTATCCGTGGGATACCCTGTCAACATGGCGATGAAACAGGTGAACCTGTTTCC
ACACATGGTTATTCAAATGACTGCGATTGGTGAGGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTTGCTGAATACT
TTGAACAGGAGGTCAATAATGCAGTGGATGCACTTAGCAGTCTGCTCGAGCCCATGATTATGGTCTTCATCGGTGTTGTC
GTAGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (289-411)

• Type II secretion system (T2SS), protein F (T2SSF) (85-208)

3D structure

• AlphaFold DB: Q3BQ78

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.408	94.524	0.514
pilC	Legionella pneumophila strain ERS1305867	53.383	95	0.507
pilC	Acinetobacter baylyi ADP1	51.741	95.714	0.495
pilC	Acinetobacter baumannii D1279779	50	95.714	0.479
pilG	Neisseria gonorrhoeae MS11	44.612	95	0.424
pilG	Neisseria meningitidis 44/76-A	44.11	95	0.419
pilC	Vibrio cholerae strain A1552	41.5	95.238	0.395
pilC	Vibrio campbellii strain DS40M4	39.409	96.667	0.381