Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PverR02_RS04355 Genome accession   NZ_CP018420
Coordinates   951657..952865 (-) Length   402 a.a.
NCBI ID   WP_079442839.1    Uniprot ID   -
Organism   Pseudomonas veronii strain R02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 946657..957865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PverR02_RS04320 (PverR02_04220) - 947614..948363 (+) 750 WP_079442836.1 hydroxypyruvate isomerase family protein -
  PverR02_RS04325 (PverR02_04225) - 948535..949002 (+) 468 WP_057005137.1 hypothetical protein -
  PverR02_RS04330 (PverR02_04230) - 948999..949688 (+) 690 WP_046384732.1 energy-coupling factor ABC transporter permease -
  PverR02_RS04335 (PverR02_04235) - 949765..949980 (+) 216 WP_003171680.1 hypothetical protein -
  PverR02_RS04340 (PverR02_04240) yacG 949977..950177 (-) 201 WP_017845472.1 DNA gyrase inhibitor YacG -
  PverR02_RS04345 (PverR02_04245) coaE 950174..950797 (-) 624 WP_079442837.1 dephospho-CoA kinase -
  PverR02_RS04350 (PverR02_04250) pilD 950794..951660 (-) 867 WP_079442838.1 A24 family peptidase Machinery gene
  PverR02_RS04355 (PverR02_04255) pilC 951657..952865 (-) 1209 WP_079442839.1 type II secretion system F family protein Machinery gene
  PverR02_RS04360 (PverR02_04260) - 953067..953480 (+) 414 WP_079442840.1 pilin -
  PverR02_RS04365 (PverR02_04265) - 953516..954925 (+) 1410 WP_079442841.1 O-antigen ligase -
  PverR02_RS04375 (PverR02_04275) - 955174..955479 (+) 306 WP_017845466.1 DUF6388 family protein -
  PverR02_RS04380 (PverR02_04280) nadC 955523..956371 (-) 849 WP_046384727.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43423.69 Da        Isoelectric Point: 9.9380

>NTDB_id=208579 PverR02_RS04355 WP_079442839.1 951657..952865(-) (pilC) [Pseudomonas veronii strain R02]
MTNAATTYAWEGINRQGRRVSGQTVGHDLARVKAQLRQQGICPGRVRKQSAGLPSLAAPIKPADIALFTRQLATLLKAGI
ALLQALDVISEGFDNRHMYRLVKGLKQEIGAGNTLASALRKQPRYFDDLYCNLVAAGEQAGALETLLERVADHLEKSERL
KARIKKAMTYPIAVIVVASLVSSLLLIHVVPQFQNLFTSVDSELPGFTRYVIALSEFLQQAWWMLALSLGAGGLGLRRAY
RVSPGFRHWLDAGLLKAPLAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAAAAGNQLFKQAIEHMRHDVSTGMPLN
RAMAASGLFPGMAIQMTAIGEESGTLEHMLEKVASHYESDVDTLVEQLTSLMEPLIMVVLGGIVGALVIALYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=208579 PverR02_RS04355 WP_079442839.1 951657..952865(-) (pilC) [Pseudomonas veronii strain R02]
ATGACCAACGCTGCCACGACATACGCCTGGGAAGGCATCAACCGCCAGGGACGCAGGGTGTCCGGGCAAACCGTCGGCCA
CGACCTCGCGCGGGTCAAGGCACAACTGCGCCAGCAAGGGATTTGCCCTGGCCGCGTGCGCAAACAATCCGCCGGCCTGC
CAAGCCTCGCTGCGCCGATCAAACCGGCGGACATTGCCCTGTTCACCCGCCAACTGGCGACACTGCTGAAGGCCGGCATT
GCCTTGCTGCAAGCCCTCGACGTGATCAGCGAAGGCTTCGACAACCGCCACATGTACAGGCTGGTAAAAGGCCTGAAACA
GGAGATCGGCGCCGGGAATACCCTGGCGTCGGCCCTGCGCAAACAGCCGCGCTACTTCGATGACCTGTACTGCAACCTGG
TGGCGGCGGGTGAGCAGGCCGGCGCCCTGGAAACCCTTCTGGAGCGGGTGGCGGATCACCTGGAAAAGAGCGAACGGCTC
AAGGCCCGGATCAAGAAGGCCATGACCTACCCCATCGCGGTCATCGTGGTCGCCAGCCTCGTCAGCAGTCTCTTGCTGAT
CCATGTGGTGCCGCAATTCCAGAACCTGTTCACCAGCGTCGACAGCGAGTTGCCCGGTTTTACTCGGTACGTGATTGCCT
TGTCCGAGTTCCTGCAACAAGCCTGGTGGATGCTGGCGCTCAGCCTGGGCGCGGGAGGTCTGGGGTTGCGCCGGGCCTAT
CGCGTATCGCCGGGTTTTCGTCATTGGCTGGATGCCGGTTTGTTGAAAGCGCCCCTGGCAGGCACACTGCTGAAAAAGTC
GGCGGTCGCCCGCTACGCGCGCACGCTTTCAACTACGTTCGCGGCCGGAGTGCCTTTGGTGCAGGCCCTGGATTCAGTGG
CCGCCGCTGCCGGCAACCAGCTATTCAAACAGGCTATCGAACATATGCGTCACGATGTATCCACAGGCATGCCGCTGAAT
CGGGCCATGGCCGCCAGCGGCCTGTTCCCTGGCATGGCGATCCAGATGACGGCGATTGGTGAAGAATCCGGCACCCTGGA
GCACATGCTGGAAAAAGTCGCGAGCCACTATGAGTCGGACGTCGACACGCTGGTCGAGCAACTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTGCTCGGCGGGATTGTCGGCGCTTTGGTAATCGCCCTGTACCTGCCGGTCTTCCAACTCGGTACG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.838

98.507

0.58
  pilC Acinetobacter baylyi ADP1

50.623

99.751

0.505
  pilC Acinetobacter baumannii D1279779

48.485

98.507

0.478
  pilC Legionella pneumophila strain ERS1305867

47.727

98.507

0.47
  pilC Vibrio cholerae strain A1552

39.44

97.761

0.386
  pilC Thermus thermophilus HB27

38.596

99.254

0.383
  pilC Vibrio campbellii strain DS40M4

38.168

97.761

0.373
  pilG Neisseria gonorrhoeae MS11

38.845

94.776

0.368
  pilG Neisseria meningitidis 44/76-A

38.058

94.776

0.361

Multiple sequence alignment