Detailed information NTG0208578

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PverR02_RS04350
• Genome accession: NZ_CP018420
• Coordinates: 950794..951660 (-)
• Length: 288 a.a.
• NCBI ID: WP_079442838.1
• Uniprot ID: -
• Organism: Pseudomonas veronii strain R02
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 945794..956660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PverR02_RS04315 (PverR02_04215)	-	946544..947446 (-)	903	WP_079442835.1	GntR family transcriptional regulator	-
PverR02_RS04320 (PverR02_04220)	-	947614..948363 (+)	750	WP_079442836.1	hydroxypyruvate isomerase family protein	-
PverR02_RS04325 (PverR02_04225)	-	948535..949002 (+)	468	WP_057005137.1	hypothetical protein	-
PverR02_RS04330 (PverR02_04230)	-	948999..949688 (+)	690	WP_046384732.1	energy-coupling factor ABC transporter permease	-
PverR02_RS04335 (PverR02_04235)	-	949765..949980 (+)	216	WP_003171680.1	hypothetical protein	-
PverR02_RS04340 (PverR02_04240)	yacG	949977..950177 (-)	201	WP_017845472.1	DNA gyrase inhibitor YacG	-
PverR02_RS04345 (PverR02_04245)	coaE	950174..950797 (-)	624	WP_079442837.1	dephospho-CoA kinase	-
PverR02_RS04350 (PverR02_04250)	pilD	950794..951660 (-)	867	WP_079442838.1	A24 family peptidase	Machinery gene
PverR02_RS04355 (PverR02_04255)	pilC	951657..952865 (-)	1209	WP_079442839.1	type II secretion system F family protein	Machinery gene
PverR02_RS04360 (PverR02_04260)	-	953067..953480 (+)	414	WP_079442840.1	pilin	-
PverR02_RS04365 (PverR02_04265)	-	953516..954925 (+)	1410	WP_079442841.1	O-antigen ligase	-
PverR02_RS04375 (PverR02_04275)	-	955174..955479 (+)	306	WP_017845466.1	DUF6388 family protein	-
PverR02_RS04380 (PverR02_04280)	nadC	955523..956371 (-)	849	WP_046384727.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31871.18 Da
• Isoelectric Point: 7.9075

>NTDB_id=208578 PverR02_RS04350 WP_079442838.1 950794..951660(-) (pilD) [Pseudomonas veronii strain R02]
MSLLLSQQPWAFVAMAMVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPGDPVGPRYNLMQPNSCCPHCNQPIRPW
ENIPLLSFLMLRGRCAHCREAISTRYPLTELACGLISAVVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLMLNSVELLVPLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLVGVC
GGLILLRRSKIQAATPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=208578 PverR02_RS04350 WP_079442838.1 950794..951660(-) (pilD) [Pseudomonas veronii strain R02]
TTGAGCCTGCTGTTGAGCCAGCAGCCGTGGGCCTTTGTCGCCATGGCAATGGTGCTGGGCTTGATCGTGGGCAGTTTCCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGGGAATGGCGCGCACAGGCCCATGAAGTGCTCGGTTTGCCCG
GCGACCCCGTCGGGCCGAGATACAACCTGATGCAGCCCAATTCCTGCTGCCCGCACTGCAATCAGCCGATTCGGCCGTGG
GAAAACATCCCGCTGCTCAGCTTCCTGATGCTCCGGGGCCGCTGTGCCCATTGCCGCGAAGCGATCAGTACGCGTTATCC
CTTGACCGAACTGGCGTGCGGGTTGATCTCGGCCGTGGTGGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGGCGCAGTGA
TGCTGTTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGTCGACCACCAACTGCTGCCCGACGTGCTGGTCCTGCCG
CTGTTGTGGCTGGGGCTGATGCTTAACAGCGTCGAGCTGCTGGTGCCCCTGCCCGATGCACTGTGGGGTGCGGTGATCGG
CTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGATGACGCTGCTGATGTCATCGCTGGTGGGCGTGTGC
GGCGGGCTGATCCTGCTGCGTCGGAGCAAGATCCAGGCGGCCACGCCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.036	96.528	0.531
pilD	Vibrio campbellii strain DS40M4	50.179	96.875	0.486
pilD	Acinetobacter baumannii D1279779	49.27	95.139	0.469
pilD	Acinetobacter nosocomialis M2	48.905	95.139	0.465
pilD	Neisseria gonorrhoeae MS11	47.778	93.75	0.448