Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BOP93_RS03965 Genome accession   NZ_CP018049
Coordinates   893213..894421 (-) Length   402 a.a.
NCBI ID   WP_104501626.1    Uniprot ID   A0A2L0RRI4
Organism   Pseudomonas orientalis strain F9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 888213..899421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOP93_RS03930 (BOP93_03775) - 888325..889215 (+) 891 WP_237140393.1 DMT family transporter -
  BOP93_RS03935 (BOP93_03780) - 889254..890252 (-) 999 WP_104501623.1 fatty acid desaturase -
  BOP93_RS03940 (BOP93_03785) - 890568..891257 (+) 690 WP_104505237.1 energy-coupling factor ABC transporter permease -
  BOP93_RS03945 (BOP93_03790) - 891321..891536 (+) 216 WP_003171680.1 hypothetical protein -
  BOP93_RS03950 (BOP93_03795) yacG 891533..891733 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  BOP93_RS03955 (BOP93_03800) coaE 891730..892353 (-) 624 WP_104501624.1 dephospho-CoA kinase -
  BOP93_RS03960 (BOP93_03805) pilD 892350..893216 (-) 867 WP_104501625.1 A24 family peptidase Machinery gene
  BOP93_RS03965 (BOP93_03810) pilC 893213..894421 (-) 1209 WP_104501626.1 type II secretion system F family protein Machinery gene
  BOP93_RS03970 (BOP93_03815) - 894620..895033 (+) 414 WP_104501627.1 pilin -
  BOP93_RS03980 (BOP93_03825) - 895344..895649 (+) 306 WP_104501628.1 DUF6388 family protein -
  BOP93_RS03985 (BOP93_03830) nadC 895769..896617 (-) 849 WP_104501629.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BOP93_RS03990 (BOP93_03835) - 896861..899017 (+) 2157 WP_104501630.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43149.58 Da        Isoelectric Point: 10.1153

>NTDB_id=205349 BOP93_RS03965 WP_104501626.1 893213..894421(-) (pilC) [Pseudomonas orientalis strain F9]
MNDSSTIYAWQGINHKGRRVCGKIAGHDLARVKARLREQGICPVRVRRQSPGLPSLAAPILPADIALFTRQLATLLKAGI
PLLQAFDIISEGVENRPLRKLVTGLKQHIAAGNSLASTLRQHPRYFDDLYCHLVAAGEQAGALETLLERVAIQLEKNQQL
KTRIRKAMTYPLAVLVVAGLVSAVLLIHVVPRFQNLFAGADSQLPGFTLGVIALSDFLQQAWWILALGLGAAIGGLRHAY
RVSAVFRYRLEAGLLKAPLAGKLLNKAAVARYARTLATTFAAGVPLVQALGSVAGAVGNGPFKQAIEHMRHDVSTGMQLN
QSMAASGLFPGVAIQMTAIGEESGTLDHMLEKVANHYEADVETLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=205349 BOP93_RS03965 WP_104501626.1 893213..894421(-) (pilC) [Pseudomonas orientalis strain F9]
ATGAACGACAGCTCGACGATCTACGCCTGGCAAGGCATCAACCACAAAGGCCGCAGGGTATGCGGGAAAATCGCGGGGCA
TGACCTTGCGCGGGTCAAGGCACGACTACGCGAGCAGGGGATCTGCCCCGTGCGTGTACGCAGGCAATCGCCAGGCCTGC
CAAGCCTGGCGGCGCCGATACTGCCGGCGGACATCGCGCTGTTCACCCGCCAGTTGGCGACGCTGTTGAAGGCGGGCATT
CCGCTGCTGCAAGCCTTCGACATCATCAGCGAAGGCGTCGAAAACCGCCCACTGCGCAAGCTGGTAACGGGTCTGAAACA
ACACATCGCCGCCGGTAACAGCCTGGCCAGCACGCTGCGCCAACACCCCCGTTACTTCGATGACCTTTACTGTCACCTGG
TTGCCGCCGGTGAACAGGCCGGTGCCCTGGAAACACTGCTGGAGCGCGTGGCCATTCAGTTGGAGAAAAACCAACAGCTC
AAGACCAGGATCAGGAAAGCCATGACCTATCCTCTTGCAGTGCTGGTGGTGGCCGGCCTGGTCAGCGCAGTGTTGTTGAT
ACACGTGGTGCCGCGGTTCCAGAACCTGTTCGCCGGAGCCGACAGCCAATTGCCCGGTTTTACCCTGGGGGTCATTGCCC
TCTCCGATTTTCTGCAACAGGCCTGGTGGATACTGGCCCTGGGCCTGGGCGCAGCCATTGGCGGGCTGCGCCACGCCTAT
CGTGTTTCTGCGGTTTTTCGCTATCGACTGGAAGCGGGTTTGTTGAAAGCCCCCCTGGCAGGCAAACTATTGAACAAAGC
TGCCGTCGCCCGCTACGCCCGCACGCTTGCAACCACCTTTGCGGCAGGTGTCCCGCTGGTGCAGGCGCTGGGCTCAGTGG
CCGGCGCCGTCGGTAATGGCCCTTTCAAACAGGCAATCGAACATATGCGCCACGACGTATCTACAGGCATGCAGTTGAAT
CAATCCATGGCCGCCAGCGGCCTGTTTCCAGGCGTGGCGATCCAGATGACGGCAATCGGCGAAGAGTCCGGCACCCTGGA
CCACATGCTGGAAAAGGTCGCAAATCATTACGAGGCCGACGTAGAGACTCTCGTCGATAACCTCACCAGCTTGATGGAAC
CGCTGATCATGGTGGTGCTGGGGAGCATCGTCGGTGCGCTGGTGATTGCAATGTACCTACCGGTGTTTCAACTGGGTTCG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0RRI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.061

98.507

0.552
  pilC Acinetobacter baylyi ADP1

51.01

98.507

0.502
  pilC Acinetobacter baumannii D1279779

48.861

98.259

0.48
  pilC Legionella pneumophila strain ERS1305867

48.101

98.259

0.473
  pilG Neisseria gonorrhoeae MS11

41.099

95.025

0.391
  pilG Neisseria meningitidis 44/76-A

40.314

95.025

0.383
  pilC Vibrio cholerae strain A1552

38.325

98.01

0.376
  pilC Vibrio campbellii strain DS40M4

38.035

98.756

0.376
  pilC Thermus thermophilus HB27

37.157

99.751

0.371

Multiple sequence alignment