Detailed information NTG0205348

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BOP93_RS03960
• Genome accession: NZ_CP018049
• Coordinates: 892350..893216 (-)
• Length: 288 a.a.
• NCBI ID: WP_104501625.1
• Uniprot ID: A0A2L0RRU2
• Organism: Pseudomonas orientalis strain F9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 887350..898216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BOP93_RS03930 (BOP93_03775)	-	888325..889215 (+)	891	WP_237140393.1	DMT family transporter	-
BOP93_RS03935 (BOP93_03780)	-	889254..890252 (-)	999	WP_104501623.1	fatty acid desaturase	-
BOP93_RS03940 (BOP93_03785)	-	890568..891257 (+)	690	WP_104505237.1	energy-coupling factor ABC transporter permease	-
BOP93_RS03945 (BOP93_03790)	-	891321..891536 (+)	216	WP_003171680.1	hypothetical protein	-
BOP93_RS03950 (BOP93_03795)	yacG	891533..891733 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
BOP93_RS03955 (BOP93_03800)	coaE	891730..892353 (-)	624	WP_104501624.1	dephospho-CoA kinase	-
BOP93_RS03960 (BOP93_03805)	pilD	892350..893216 (-)	867	WP_104501625.1	A24 family peptidase	Machinery gene
BOP93_RS03965 (BOP93_03810)	pilC	893213..894421 (-)	1209	WP_104501626.1	type II secretion system F family protein	Machinery gene
BOP93_RS03970 (BOP93_03815)	-	894620..895033 (+)	414	WP_104501627.1	pilin	-
BOP93_RS03980 (BOP93_03825)	-	895344..895649 (+)	306	WP_104501628.1	DUF6388 family protein	-
BOP93_RS03985 (BOP93_03830)	nadC	895769..896617 (-)	849	WP_104501629.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31805.17 Da
• Isoelectric Point: 8.1698

>NTDB_id=205348 BOP93_RS03960 WP_104501625.1 892350..893216(-) (pilD) [Pseudomonas orientalis strain F9]
MSALLGEQPWAFVGMALVLGLIVGSFLNVLAWRLPKMLEREWRAQAHEILGLPAAPAEPVYNLMRPNSCCPRCDQPIRPW
ENIPLLSYLMLKGRCSHCRATISARYPLTELTCALISAIVAWHFGFGWQAGAVMLLSWGLLGMSLIDVDHQLLPDAMVLP
LLWLGLVLNSLGLLVTLPDALWGAVLGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPITLLMASVLGVF
VGLLLMRWRKAHMSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=205348 BOP93_RS03960 WP_104501625.1 892350..893216(-) (pilD) [Pseudomonas orientalis strain F9]
TTGAGCGCGTTGCTGGGCGAGCAGCCCTGGGCGTTTGTCGGCATGGCGCTGGTGCTGGGCCTGATTGTTGGCAGTTTTCT
CAATGTGCTGGCATGGCGCCTGCCCAAAATGCTTGAGCGGGAATGGCGCGCACAGGCCCATGAGATCCTCGGCCTGCCCG
CCGCGCCAGCGGAGCCGGTTTATAACTTGATGCGCCCGAATTCGTGCTGCCCGCGCTGCGACCAGCCGATTCGCCCCTGG
GAAAATATCCCCCTGCTCAGCTACCTGATGCTCAAGGGGCGTTGCTCCCATTGCCGTGCAACCATCAGCGCACGCTATCC
CCTCACCGAACTGACCTGTGCGCTGATATCCGCCATCGTCGCCTGGCACTTCGGCTTTGGCTGGCAGGCCGGCGCGGTGA
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGATGTGGATCACCAACTGCTGCCGGATGCCATGGTGCTGCCG
TTGCTATGGTTGGGGCTTGTCCTCAACAGTCTGGGCCTGCTCGTAACATTGCCCGATGCGTTATGGGGCGCGGTGCTGGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGATTTCAAGC
TATTGGCGCTGCTAGGTGCCTGGGGCGGCTGGCAGATACTGCCGATAACGCTGCTGATGGCGTCAGTGCTCGGGGTGTTT
GTCGGGCTGCTGCTGATGCGCTGGCGCAAGGCGCACATGTCGGCACCGATGCCATTTGGACCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

3D structure

• AlphaFold DB: A0A2L0RRU2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.676	96.528	0.528
pilD	Vibrio campbellii strain DS40M4	49.466	97.569	0.483
pilD	Neisseria gonorrhoeae MS11	48.519	93.75	0.455
pilD	Acinetobacter baumannii D1279779	44.928	95.833	0.431
pilD	Acinetobacter nosocomialis M2	44.928	95.833	0.431