Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CA696_RS04315 Genome accession   NZ_CP023142
Coordinates   837471..838691 (+) Length   406 a.a.
NCBI ID   WP_001735713.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN061770     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 832471..843691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA696_RS04300 (CA696_004300) rfbA 832614..833492 (+) 879 WP_001556223.1 glucose-1-phosphate thymidylyltransferase RfbA -
  CA696_RS04305 (CA696_004305) rfbC 833559..834110 (+) 552 WP_021526989.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  CA696_RS04310 (CA696_004310) - 834160..836307 (+) 2148 WP_000281770.1 capsular polysaccharide biosynthesis protein -
  CA696_RS04315 (CA696_004315) kpsS 837471..838691 (+) 1221 WP_001735713.1 capsular biosynthesis protein Regulator
  CA696_RS04320 (CA696_004320) - 838717..838947 (-) 231 Protein_790 hypothetical protein -
  CA696_RS04325 (CA696_004325) - 839053..839229 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  CA696_RS04330 (CA696_004330) - 839309..839682 (-) 374 Protein_792 DUF5983 family protein -
  CA696_RS04335 (CA696_004335) - 839679..840053 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  CA696_RS04340 (CA696_004340) - 840143..840511 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CA696_RS04345 (CA696_004345) - 840674..840895 (-) 222 WP_001735710.1 DUF987 domain-containing protein -
  CA696_RS04350 (CA696_004350) radC 840964..841440 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  CA696_RS04355 (CA696_004355) - 841456..841941 (-) 486 WP_001735709.1 antirestriction protein -
  CA696_RS04360 (CA696_004360) - 841996..842814 (-) 819 WP_016231181.1 DUF932 domain-containing protein -
  CA696_RS04370 (CA696_004370) - 842932..843127 (-) 196 Protein_799 DUF905 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48421.92 Da        Isoelectric Point: 10.1710

>NTDB_id=205348 CA696_RS04315 WP_001735713.1 837471..838691(+) (kpsS) [Escherichia coli strain CFSAN061770]
MKNNALSILLSGKKYLLLQGPMGPFFNDIAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSAM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=205348 CA696_RS04315 WP_001735713.1 837471..838691(+) (kpsS) [Escherichia coli strain CFSAN061770]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATATTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGGCGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ACGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382

Multiple sequence alignment