Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PPYC2_RS10915 Genome accession   NZ_CP017968
Coordinates   2365583..2366851 (+) Length   422 a.a.
NCBI ID   WP_028542703.1    Uniprot ID   A0AAJ3IY51
Organism   Paenibacillus polymyxa strain YC0573     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2360583..2371851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPYC2_RS10890 (PPYC2_15945) - 2361418..2361672 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  PPYC2_RS10895 (PPYC2_15940) - 2361900..2362673 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  PPYC2_RS10900 (PPYC2_15935) - 2362704..2363804 (+) 1101 WP_071558855.1 helix-turn-helix domain-containing protein -
  PPYC2_RS27640 - 2363889..2364053 (+) 165 WP_023988236.1 hypothetical protein -
  PPYC2_RS10905 (PPYC2_15930) - 2364198..2364689 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  PPYC2_RS10910 (PPYC2_15925) pgsA 2364900..2365487 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PPYC2_RS10915 (PPYC2_15920) cinA 2365583..2366851 (+) 1269 WP_028542703.1 competence/damage-inducible protein A Machinery gene
  PPYC2_RS10920 (PPYC2_15915) recA 2367093..2368154 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  PPYC2_RS10925 (PPYC2_15910) - 2368351..2369100 (+) 750 WP_028542702.1 regulatory protein RecX -
  PPYC2_RS10930 (PPYC2_15905) rny 2369474..2371018 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46384.36 Da        Isoelectric Point: 4.7700

>NTDB_id=204568 PPYC2_RS10915 WP_028542703.1 2365583..2366851(+) (cinA) [Paenibacillus polymyxa strain YC0573]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKDA
IASVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDQAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=204568 PPYC2_RS10915 WP_028542703.1 2365583..2366851(+) (cinA) [Paenibacillus polymyxa strain YC0573]
ATGAAAGCTGAAATAATTGCAGTAGGTACAGAGTTATTGCTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGTTGGCTACAATCGGAATCGATGTATATTTTCAGACTGTAGTTGGCGATAACATAGATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGTGGTCTGGGACCGACTCAGGATGATTTGACGAAAGATGCG
ATAGCGTCTGTATTGGGGCGAAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAGTTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGCGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCAATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTCAAACCCATGTTT
GCAAACCAAGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCAAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTGATCCAATCCCAGACAGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCACTAATTAAGCTGACGGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAATATATGTATGCAAGTGAAGATGTTACGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGGGCTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAACGTGCCT
TATGATTATTTGGAAGGGGATCAAGCGCCAGGTGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTTGCCGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGTTTGG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGTAACCGTGAAACAATCCGA
CTGCGATCAGTCAAAGCAATCCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(260-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.244

97.156

0.488
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

45.882

100

0.462
  cinA Streptococcus suis isolate S10

45.078

91.469

0.412

Multiple sequence alignment