Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CJZ79_RS01055 Genome accession   NZ_CP022912
Coordinates   198057..198725 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli O6:H16 strain 2011EL-1370-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 193057..203725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ79_RS01020 yicC 193076..193939 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CJZ79_RS01030 rph 194066..194782 (+) 717 WP_001247089.1 ribonuclease PH -
  CJZ79_RS01035 pyrE 194848..195489 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CJZ79_RS01040 slmA 195526..196122 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CJZ79_RS01045 dut 196229..196687 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CJZ79_RS01050 coaBC 196665..197885 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CJZ79_RS01055 radC 198057..198725 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CJZ79_RS01060 rpmB 198942..199178 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CJZ79_RS01065 rpmG 199199..199366 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CJZ79_RS01070 mutM 199464..200273 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CJZ79_RS01075 coaD 200312..200791 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CJZ79_RS01080 waaA 200799..202076 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CJZ79_RS01085 rfaQ 202489..203547 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=204569 CJZ79_RS01055 WP_001297375.1 198057..198725(+) (radC) [Escherichia coli O6:H16 strain 2011EL-1370-2]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=204569 CJZ79_RS01055 WP_001297375.1 198057..198725(+) (radC) [Escherichia coli O6:H16 strain 2011EL-1370-2]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment