Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BMF34_RS09960 Genome accession   NZ_CP017952
Coordinates   2034541..2035812 (-) Length   423 a.a.
NCBI ID   WP_003100430.1    Uniprot ID   -
Organism   Streptococcus iniae strain 89353     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2029541..2040812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMF34_RS09930 (BMF34_09835) - 2030551..2031048 (-) 498 WP_003100421.1 ferrous iron transport protein A -
  BMF34_RS09935 (BMF34_09840) - 2031226..2031525 (-) 300 WP_003100423.1 DUF1292 domain-containing protein -
  BMF34_RS09940 (BMF34_09845) ruvX 2031536..2031955 (-) 420 WP_037582983.1 Holliday junction resolvase RuvX -
  BMF34_RS09945 (BMF34_09850) - 2031952..2032221 (-) 270 WP_003100426.1 IreB family regulatory phosphoprotein -
  BMF34_RS09950 (BMF34_09855) spx 2032333..2032731 (-) 399 WP_003100427.1 transcriptional regulator Spx -
  BMF34_RS09955 (BMF34_09860) recA 2033326..2034459 (-) 1134 WP_003100429.1 recombinase RecA Machinery gene
  BMF34_RS09960 (BMF34_09865) cinA 2034541..2035812 (-) 1272 WP_003100430.1 competence/damage-inducible protein A Machinery gene
  BMF34_RS09965 (BMF34_09870) - 2035947..2036498 (-) 552 WP_003100431.1 DNA-3-methyladenine glycosylase I -
  BMF34_RS09970 (BMF34_09875) ruvA 2036501..2037094 (-) 594 WP_003100432.1 Holliday junction branch migration protein RuvA -
  BMF34_RS09975 (BMF34_09880) - 2037096..2038319 (-) 1224 WP_003100433.1 MFS transporter -
  BMF34_RS09980 (BMF34_09885) mutL 2038329..2040287 (-) 1959 WP_003100434.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45769.39 Da        Isoelectric Point: 4.9542

>NTDB_id=204360 BMF34_RS09960 WP_003100430.1 2034541..2035812(-) (cinA) [Streptococcus iniae strain 89353]
MKAELIAVGTELLTGQILNTNAQFLSEKMAEIGVDVYFQTAVGDNEERLLSVIDIASKRSHLIILCGGLGPTEDDLTKQT
LAKYLGKNLIFDSDASLKLDDFFSSRPSHSRTPNNERQAQVIEGSIPIQNLTGLAVGGLIEVNGITYVVLPGPPNELRPM
VNQGLIPLLSGNQSALYSKVLRFFGIGESQLVTVLADIIENQTDPTIAPYAKIGEVTLRLSTKGRNQSEAYQKLADFEKK
LLALTTLDGSYLSEFLYGYGEDNSLAKEVFQLLKKHTKTLTAAESLTAGMFQSSLADFSGSSAVFNGGFVTYSITEKSKM
LGIPLELLEQHGVVSAFTAEQMAMKAKTLTDSDIAISLTGVAGPDSLEEQPVGTVYIGIASQETVESFKIFIGGRSRSDI
RKIACMHAFNLVRKTLLKGENLV

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=204360 BMF34_RS09960 WP_003100430.1 2034541..2035812(-) (cinA) [Streptococcus iniae strain 89353]
ATGAAGGCGGAATTGATTGCTGTTGGAACAGAATTATTAACAGGACAAATTCTAAATACCAATGCCCAATTTTTGTCTGA
GAAGATGGCTGAGATTGGAGTCGATGTTTATTTTCAAACGGCTGTTGGAGATAACGAGGAACGGCTCTTATCAGTGATTG
ACATTGCAAGTAAGCGAAGTCATTTAATTATTTTGTGTGGTGGCCTTGGACCTACAGAAGATGATTTAACAAAGCAAACT
CTTGCTAAGTATTTAGGAAAAAATCTGATTTTTGATTCTGATGCTAGCTTAAAATTGGATGATTTTTTCTCCAGTCGACC
AAGTCATTCAAGAACCCCTAATAATGAGCGTCAAGCTCAAGTGATTGAAGGCTCAATCCCAATTCAAAATCTTACGGGCC
TTGCAGTAGGTGGCTTGATTGAGGTAAATGGGATTACTTATGTTGTTTTACCTGGACCACCAAATGAATTAAGACCAATG
GTTAATCAAGGTCTCATTCCGTTACTATCGGGTAATCAAAGTGCTTTGTACTCTAAAGTGTTGCGTTTTTTTGGTATCGG
TGAGAGTCAACTGGTAACGGTCCTTGCTGATATTATTGAAAATCAAACGGATCCTACCATTGCTCCCTACGCTAAAATTG
GAGAAGTAACATTACGACTATCAACAAAAGGGCGAAATCAGAGTGAAGCTTATCAAAAACTGGCTGATTTTGAAAAAAAA
CTTCTAGCGCTTACTACTTTGGATGGCTCCTACCTTAGTGAATTTCTTTATGGCTATGGAGAGGATAATAGTTTGGCAAA
AGAAGTCTTTCAATTATTGAAGAAACACACAAAAACCTTAACGGCAGCAGAAAGTTTAACGGCAGGAATGTTTCAATCTT
CTTTGGCAGACTTTTCAGGTTCTTCAGCAGTTTTTAATGGAGGATTTGTCACATATAGTATAACTGAAAAGTCAAAAATG
TTGGGAATACCTTTAGAGTTGCTCGAGCAGCATGGGGTTGTTAGTGCTTTTACTGCAGAGCAGATGGCCATGAAAGCAAA
AACGCTAACAGACTCGGATATTGCCATTAGTTTAACTGGTGTTGCAGGACCAGATAGTTTGGAGGAACAGCCAGTAGGAA
CAGTTTATATTGGTATTGCTAGTCAAGAAACAGTTGAATCATTTAAGATTTTCATCGGAGGTCGCAGCCGTTCAGATATT
AGGAAAATAGCATGTATGCATGCTTTTAACCTGGTCCGTAAAACTTTATTAAAGGGCGAAAATTTGGTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(263-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

68.182

98.818

0.674
  cinA Streptococcus mutans UA159

67.376

100

0.674
  cinA Streptococcus mitis SK321

67.943

98.818

0.671
  cinA Streptococcus pneumoniae Rx1

67.703

98.818

0.669
  cinA Streptococcus pneumoniae R6

67.703

98.818

0.669
  cinA Streptococcus pneumoniae D39

67.464

98.818

0.667
  cinA Streptococcus mitis NCTC 12261

67.464

98.818

0.667
  cinA Streptococcus suis isolate S10

52.404

98.345

0.515
  cinA Bacillus subtilis subsp. subtilis str. 168

47.847

98.818

0.473

Multiple sequence alignment