Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BMF34_RS09955 Genome accession   NZ_CP017952
Coordinates   2033326..2034459 (-) Length   377 a.a.
NCBI ID   WP_003100429.1    Uniprot ID   A0A1J0N1K1
Organism   Streptococcus iniae strain 89353     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2028326..2039459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMF34_RS09925 (BMF34_09830) feoB 2028423..2030576 (-) 2154 WP_016356258.1 ferrous iron transport protein B -
  BMF34_RS09930 (BMF34_09835) - 2030551..2031048 (-) 498 WP_003100421.1 ferrous iron transport protein A -
  BMF34_RS09935 (BMF34_09840) - 2031226..2031525 (-) 300 WP_003100423.1 DUF1292 domain-containing protein -
  BMF34_RS09940 (BMF34_09845) ruvX 2031536..2031955 (-) 420 WP_037582983.1 Holliday junction resolvase RuvX -
  BMF34_RS09945 (BMF34_09850) - 2031952..2032221 (-) 270 WP_003100426.1 IreB family regulatory phosphoprotein -
  BMF34_RS09950 (BMF34_09855) spx 2032333..2032731 (-) 399 WP_003100427.1 transcriptional regulator Spx -
  BMF34_RS09955 (BMF34_09860) recA 2033326..2034459 (-) 1134 WP_003100429.1 recombinase RecA Machinery gene
  BMF34_RS09960 (BMF34_09865) cinA 2034541..2035812 (-) 1272 WP_003100430.1 competence/damage-inducible protein A Machinery gene
  BMF34_RS09965 (BMF34_09870) - 2035947..2036498 (-) 552 WP_003100431.1 DNA-3-methyladenine glycosylase I -
  BMF34_RS09970 (BMF34_09875) ruvA 2036501..2037094 (-) 594 WP_003100432.1 Holliday junction branch migration protein RuvA -
  BMF34_RS09975 (BMF34_09880) - 2037096..2038319 (-) 1224 WP_003100433.1 MFS transporter -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40550.13 Da        Isoelectric Point: 4.8407

>NTDB_id=204359 BMF34_RS09955 WP_003100429.1 2033326..2034459(-) (recA) [Streptococcus iniae strain 89353]
MAKKVKKTEEITKKFGDDRRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAASLGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKKFLADHPELFDEIDHKVRVKVGLVEDTEIEEVEEVSSTTDELILDLDNAIEIED

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=204359 BMF34_RS09955 WP_003100429.1 2033326..2034459(-) (recA) [Streptococcus iniae strain 89353]
TTGGCGAAAAAAGTTAAAAAAACAGAAGAAATCACTAAAAAATTTGGTGACGACCGTAGAAAAGCTCTTGATGACGCGTT
AAAAAACATTGAAAAAGATTTCGGTAAAGGTGCTGTTATGCGTCTGGGAGAGCGTGCAGAGCAAAAAGTTCAAGTGATGA
GTTCTGGTAGTTTAGCACTTGATATTGCTTTAGGTGCTGGTGGCTATCCTAAGGGGCGTATTATTGAAATTTATGGGCCA
GAATCTTCAGGTAAAACAACAGTTGCCTTGCATGCTGTTGCTCAAGCTCAAAAAGAAGGTGGAATTGCTGCCTTTATTGA
TGCCGAACATGCACTTGATCCTGCTTATGCAGCTTCATTGGGTGTTAATATTGATGAATTGCTTTTATCACAACCAGATT
CTGGAGAGCAAGGACTTGAGATTGCAGGAAAATTGATTGACTCAGGTGCTGTTGATTTGGTTGTTGTTGACTCGGTTGCC
GCACTTGTACCACGTGCAGAAATTGATGGCGACATTGGTGATAGTCATGTTGGTTTACAAGCTCGAATGATGAGCCAAGC
CATGCGTAAACTCTCTGCATCAATTAATAAAACTAAAACAATTGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGGG
TTATGTTTGGTAATCCTGAGACAACTCCTGGTGGTCGTGCCTTGAAGTTCTACTCATCTGTTCGTTTAGATGTTCGTGGC
AATACTCAAATTAAAGGAACTGGCGATCAAAAAGATAGCAGCATCGGTAAAGAAACCAAAATCAAGGTTGTTAAAAATAA
AGTTGCCCCACCTTTTAAAGTTGCAGAAGTTGAAATCATGTATGGTGAAGGAATTTCACGCACAGGAGAACTTGTTAAAA
TTGCATCTGACCTAGACATTATCCAAAAAGCCGGTGCATGGTTCTCTTATAATGGTGAAAAGATTGGTCAAGGATCTGAG
AATGCTAAAAAATTCTTGGCAGATCATCCAGAACTCTTTGATGAGATTGACCATAAAGTTCGTGTTAAAGTGGGCTTGGT
TGAAGATACAGAGATAGAAGAAGTTGAAGAAGTTTCATCAACAACAGACGAACTTATTTTAGATTTAGATAATGCTATTG
AAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0N1K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

93.122

100

0.934
  recA Streptococcus mutans UA159

88.773

100

0.902
  recA Streptococcus mitis NCTC 12261

85.302

100

0.862
  recA Streptococcus mitis SK321

85.039

100

0.859
  recA Streptococcus pneumoniae Rx1

83.636

100

0.854
  recA Streptococcus pneumoniae D39

83.636

100

0.854
  recA Streptococcus pneumoniae R6

83.636

100

0.854
  recA Streptococcus pneumoniae TIGR4

83.636

100

0.854
  recA Lactococcus lactis subsp. cremoris KW2

77.208

93.103

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

68.571

92.838

0.637
  recA Bacillus subtilis subsp. subtilis str. 168

68.997

87.268

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.281

90.716

0.565
  recA Neisseria gonorrhoeae strain FA1090

62.236

87.798

0.546
  recA Neisseria gonorrhoeae MS11

62.236

87.798

0.546
  recA Neisseria gonorrhoeae MS11

62.236

87.798

0.546
  recA Acinetobacter baumannii D1279779

59.012

91.247

0.538
  recA Vibrio cholerae strain A1552

57.88

92.573

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.88

92.573

0.536
  recA Glaesserella parasuis strain SC1401

59.412

90.186

0.536
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.971

91.512

0.531
  recA Acinetobacter baylyi ADP1

61.231

86.207

0.528
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

85.676

0.528
  recA Helicobacter pylori 26695

56.772

92.042

0.523
  recA Helicobacter pylori strain NCTC11637

56.772

92.042

0.523
  recA Ralstonia pseudosolanacearum GMI1000

58.61

87.798

0.515
  recA Pseudomonas stutzeri DSM 10701

57.927

87.003

0.504

Multiple sequence alignment