Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K08M3_RS16280 Genome accession   NZ_CP017913
Coordinates   3418564..3419673 (-) Length   369 a.a.
NCBI ID   WP_054579448.1    Uniprot ID   A0AAW9BQB8
Organism   Vibrio alginolyticus strain K08M3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3413564..3424673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M3_RS16250 (K08M3_31770) hemF 3414025..3414942 (-) 918 WP_033906570.1 oxygen-dependent coproporphyrinogen oxidase -
  K08M3_RS16255 (K08M3_31780) - 3414990..3415547 (-) 558 WP_033906571.1 L-threonylcarbamoyladenylate synthase -
  K08M3_RS16260 (K08M3_31790) purE 3415747..3416232 (+) 486 WP_033906572.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  K08M3_RS16265 (K08M3_31800) - 3416237..3417370 (+) 1134 WP_033906573.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  K08M3_RS16270 (K08M3_31810) - 3417434..3418003 (-) 570 WP_005386647.1 type I DNA topoisomerase -
  K08M3_RS16275 (K08M3_31820) - 3418082..3418561 (-) 480 WP_054729811.1 DUF494 family protein -
  K08M3_RS16280 (K08M3_31830) dprA 3418564..3419673 (-) 1110 WP_054579448.1 DNA-processing protein DprA Machinery gene
  K08M3_RS16285 (K08M3_31840) - 3419657..3420751 (-) 1095 WP_017821578.1 LysM peptidoglycan-binding domain-containing protein -
  K08M3_RS16290 (K08M3_31850) def 3420890..3421408 (+) 519 WP_064368875.1 peptide deformylase -
  K08M3_RS16295 (K08M3_31860) fmt 3421442..3422389 (+) 948 WP_005379066.1 methionyl-tRNA formyltransferase -
  K08M3_RS16300 (K08M3_31870) rsmB 3422470..3423753 (+) 1284 WP_086047108.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39992.73 Da        Isoelectric Point: 6.8192

>NTDB_id=204026 K08M3_RS16280 WP_054579448.1 3418564..3419673(-) (dprA) [Vibrio alginolyticus strain K08M3]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPCNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=204026 K08M3_RS16280 WP_054579448.1 3418564..3419673(-) (dprA) [Vibrio alginolyticus strain K08M3]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCATGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAACCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTTTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTGCTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.469

100

0.835
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

45.245

94.038

0.425
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379
  dprA Acinetobacter baylyi ADP1

38.44

97.29

0.374

Multiple sequence alignment