Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CN03_RS14645 | Genome accession | NZ_CP017810 |
| Coordinates | 3183442..3184671 (+) | Length | 409 a.a. |
| NCBI ID | WP_075274195.1 | Uniprot ID | - |
| Organism | Thalassolituus oleivorans strain K188 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3178442..3189671
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CN03_RS14630 (CN03_14630) | nadC | 3179837..3180688 (+) | 852 | WP_075274192.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| CN03_RS18725 (CN03_14635) | - | 3180968..3181462 (+) | 495 | WP_075274193.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CN03_RS14640 (CN03_14640) | pilB | 3181700..3183397 (+) | 1698 | WP_075274194.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CN03_RS14645 (CN03_14645) | pilC | 3183442..3184671 (+) | 1230 | WP_075274195.1 | type II secretion system F family protein | Machinery gene |
| CN03_RS14650 (CN03_14650) | pilD | 3184676..3185563 (+) | 888 | WP_075274606.1 | A24 family peptidase | Machinery gene |
| CN03_RS14655 (CN03_14655) | coaE | 3185603..3186202 (+) | 600 | WP_075274196.1 | dephospho-CoA kinase | - |
| CN03_RS14660 (CN03_14660) | yacG | 3186239..3186433 (+) | 195 | WP_015485862.1 | DNA gyrase inhibitor YacG | - |
| CN03_RS14665 (CN03_14665) | - | 3186489..3187670 (-) | 1182 | WP_075274197.1 | two-component system response regulator | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 44716.35 Da Isoelectric Point: 8.5748
>NTDB_id=203104 CN03_RS14645 WP_075274195.1 3183442..3184671(+) (pilC) [Thalassolituus oleivorans strain K188]
MAKPIKTTTFQWEGTNRRGQTVKGELSGQNPAMVKAQLRKQGVEPKKIKRLSQPLFGLGGGVTKKRIKPADITFFTRQMA
TMVKAGVPLVQSFDIVADGVDNISLREVIYAIRDSVSAGNDFASALKQYPQYFDELTCNLIESGEQAGALESMLDKVAIY
KEKTEELKAKIKKALMYPMITLLVAFGVTAILLIKVVPTFDEMFKSFGAELPAPTQFIVMLSDWMQANYLYVFGGLIFIA
VAFMQGMKKSQSFRDNVETTLLKAPVFGDLIMKASVARYARVLSTTFAAGVPLVEALDSVAGAVGNVVYRNAVYNIRDEV
ASGQQMHFAMRATKVFPNMVVQMTSIGEESGALDSMLDKAASYYEAEVDNAVDNMTSLLEPAIMVFLGVVIGGMIVAMYL
PIFAMGDAI
MAKPIKTTTFQWEGTNRRGQTVKGELSGQNPAMVKAQLRKQGVEPKKIKRLSQPLFGLGGGVTKKRIKPADITFFTRQMA
TMVKAGVPLVQSFDIVADGVDNISLREVIYAIRDSVSAGNDFASALKQYPQYFDELTCNLIESGEQAGALESMLDKVAIY
KEKTEELKAKIKKALMYPMITLLVAFGVTAILLIKVVPTFDEMFKSFGAELPAPTQFIVMLSDWMQANYLYVFGGLIFIA
VAFMQGMKKSQSFRDNVETTLLKAPVFGDLIMKASVARYARVLSTTFAAGVPLVEALDSVAGAVGNVVYRNAVYNIRDEV
ASGQQMHFAMRATKVFPNMVVQMTSIGEESGALDSMLDKAASYYEAEVDNAVDNMTSLLEPAIMVFLGVVIGGMIVAMYL
PIFAMGDAI
Nucleotide
Download Length: 1230 bp
>NTDB_id=203104 CN03_RS14645 WP_075274195.1 3183442..3184671(+) (pilC) [Thalassolituus oleivorans strain K188]
ATGGCTAAACCAATAAAAACAACGACTTTCCAATGGGAAGGCACGAATCGCCGCGGACAAACCGTCAAGGGTGAGCTGAG
CGGTCAAAACCCAGCAATGGTAAAAGCACAGCTGCGCAAGCAAGGTGTTGAACCGAAAAAAATTAAACGCCTATCCCAAC
CTTTATTTGGTTTAGGCGGCGGAGTAACAAAGAAACGTATCAAACCTGCCGACATCACCTTTTTCACACGCCAAATGGCC
ACCATGGTGAAAGCGGGTGTACCGTTAGTACAGTCGTTCGATATTGTTGCCGACGGCGTGGATAATATTTCATTAAGAGA
AGTTATCTATGCCATTCGTGATTCGGTATCTGCCGGTAATGACTTTGCCTCGGCGTTAAAACAATATCCGCAGTATTTTG
ATGAGCTAACCTGCAACCTGATCGAATCGGGCGAGCAGGCGGGTGCGCTAGAATCCATGCTGGATAAAGTCGCTATTTAC
AAAGAAAAAACCGAAGAACTGAAAGCTAAAATCAAAAAAGCGCTTATGTACCCTATGATCACCTTGTTGGTGGCATTTGG
GGTAACCGCTATCCTGTTAATCAAAGTCGTACCGACTTTTGATGAAATGTTTAAAAGCTTTGGGGCTGAATTACCCGCAC
CAACCCAGTTTATTGTGATGCTTTCCGACTGGATGCAGGCAAATTACCTATATGTCTTTGGCGGACTGATTTTCATAGCC
GTTGCTTTTATGCAAGGAATGAAGAAATCACAGTCGTTTCGCGATAATGTAGAAACAACATTACTCAAGGCTCCTGTTTT
TGGTGACCTAATAATGAAAGCGTCGGTAGCTCGTTACGCGCGCGTATTGTCGACAACTTTCGCGGCGGGCGTTCCCTTGG
TTGAAGCCTTAGATTCCGTTGCAGGTGCCGTTGGCAACGTTGTATACCGCAATGCCGTATACAATATCCGTGATGAGGTC
GCCTCTGGTCAGCAAATGCATTTCGCTATGCGCGCGACTAAGGTATTCCCTAACATGGTGGTGCAAATGACCAGTATTGG
TGAAGAGTCGGGTGCCCTTGATTCTATGCTAGATAAAGCAGCCAGCTACTATGAAGCGGAAGTTGATAACGCCGTAGACA
ATATGACCTCGTTACTTGAGCCAGCCATTATGGTGTTCTTAGGTGTTGTTATCGGCGGCATGATTGTGGCTATGTACTTG
CCGATTTTTGCCATGGGCGATGCTATTTAA
ATGGCTAAACCAATAAAAACAACGACTTTCCAATGGGAAGGCACGAATCGCCGCGGACAAACCGTCAAGGGTGAGCTGAG
CGGTCAAAACCCAGCAATGGTAAAAGCACAGCTGCGCAAGCAAGGTGTTGAACCGAAAAAAATTAAACGCCTATCCCAAC
CTTTATTTGGTTTAGGCGGCGGAGTAACAAAGAAACGTATCAAACCTGCCGACATCACCTTTTTCACACGCCAAATGGCC
ACCATGGTGAAAGCGGGTGTACCGTTAGTACAGTCGTTCGATATTGTTGCCGACGGCGTGGATAATATTTCATTAAGAGA
AGTTATCTATGCCATTCGTGATTCGGTATCTGCCGGTAATGACTTTGCCTCGGCGTTAAAACAATATCCGCAGTATTTTG
ATGAGCTAACCTGCAACCTGATCGAATCGGGCGAGCAGGCGGGTGCGCTAGAATCCATGCTGGATAAAGTCGCTATTTAC
AAAGAAAAAACCGAAGAACTGAAAGCTAAAATCAAAAAAGCGCTTATGTACCCTATGATCACCTTGTTGGTGGCATTTGG
GGTAACCGCTATCCTGTTAATCAAAGTCGTACCGACTTTTGATGAAATGTTTAAAAGCTTTGGGGCTGAATTACCCGCAC
CAACCCAGTTTATTGTGATGCTTTCCGACTGGATGCAGGCAAATTACCTATATGTCTTTGGCGGACTGATTTTCATAGCC
GTTGCTTTTATGCAAGGAATGAAGAAATCACAGTCGTTTCGCGATAATGTAGAAACAACATTACTCAAGGCTCCTGTTTT
TGGTGACCTAATAATGAAAGCGTCGGTAGCTCGTTACGCGCGCGTATTGTCGACAACTTTCGCGGCGGGCGTTCCCTTGG
TTGAAGCCTTAGATTCCGTTGCAGGTGCCGTTGGCAACGTTGTATACCGCAATGCCGTATACAATATCCGTGATGAGGTC
GCCTCTGGTCAGCAAATGCATTTCGCTATGCGCGCGACTAAGGTATTCCCTAACATGGTGGTGCAAATGACCAGTATTGG
TGAAGAGTCGGGTGCCCTTGATTCTATGCTAGATAAAGCAGCCAGCTACTATGAAGCGGAAGTTGATAACGCCGTAGACA
ATATGACCTCGTTACTTGAGCCAGCCATTATGGTGTTCTTAGGTGTTGTTATCGGCGGCATGATTGTGGCTATGTACTTG
CCGATTTTTGCCATGGGCGATGCTATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
58.722 |
99.511 |
0.584 |
| pilC | Acinetobacter baumannii D1279779 |
55.611 |
98.044 |
0.545 |
| pilC | Acinetobacter baylyi ADP1 |
54.364 |
98.044 |
0.533 |
| pilC | Legionella pneumophila strain ERS1305867 |
51.122 |
98.044 |
0.501 |
| pilG | Neisseria gonorrhoeae MS11 |
43.951 |
99.022 |
0.435 |
| pilG | Neisseria meningitidis 44/76-A |
43.704 |
99.022 |
0.433 |
| pilC | Vibrio cholerae strain A1552 |
41.542 |
98.289 |
0.408 |
| pilC | Vibrio campbellii strain DS40M4 |
40.5 |
97.8 |
0.396 |