Detailed information NTG0203105

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CN03_RS14650
• Genome accession: NZ_CP017810
• Coordinates: 3184676..3185563 (+)
• Length: 295 a.a.
• NCBI ID: WP_075274606.1
• Uniprot ID: -
• Organism: Thalassolituus oleivorans strain K188
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3179676..3190563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CN03_RS14630 (CN03_14630)	nadC	3179837..3180688 (+)	852	WP_075274192.1	carboxylating nicotinate-nucleotide diphosphorylase	-
CN03_RS18725 (CN03_14635)	-	3180968..3181462 (+)	495	WP_075274193.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CN03_RS14640 (CN03_14640)	pilB	3181700..3183397 (+)	1698	WP_075274194.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CN03_RS14645 (CN03_14645)	pilC	3183442..3184671 (+)	1230	WP_075274195.1	type II secretion system F family protein	Machinery gene
CN03_RS14650 (CN03_14650)	pilD	3184676..3185563 (+)	888	WP_075274606.1	A24 family peptidase	Machinery gene
CN03_RS14655 (CN03_14655)	coaE	3185603..3186202 (+)	600	WP_075274196.1	dephospho-CoA kinase	-
CN03_RS14660 (CN03_14660)	yacG	3186239..3186433 (+)	195	WP_015485862.1	DNA gyrase inhibitor YacG	-
CN03_RS14665 (CN03_14665)	-	3186489..3187670 (-)	1182	WP_075274197.1	two-component system response regulator	-
CN03_RS18730 (CN03_14670)	-	3187823..3190441 (-)	2619	WP_189270634.1	LuxR C-terminal-related transcriptional regulator	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 32402.76 Da
• Isoelectric Point: 6.9385

>NTDB_id=203105 CN03_RS14650 WP_075274606.1 3184676..3185563(+) (pilD) [Thalassolituus oleivorans strain K188]
MFSNVFAELALLSTPWHIALVALLSLLVGSFLNVVILRLPIMMFRGWKQECQSLEDDLPDHPALKDLNKPFNLVKPDSHC
PTCHAPVKAWQNIPVISYILLRGRCGKCQTKISPRYPAVEIITALMSAVLLVQFPWGWPLAAMLVFTWLLIAMSVIDIDH
QILPDTLTLGLLWLGLLVNTQGLFTDLTSAVYGAAVGYGLLWSIFWIFKLLTGKDGMGFGDFKLLAALGAWLGLSAIPVI
VLLSSVVGAIVGIAGIIILGRDRQLPIPFGPYLAMAGWIAALWGDQIVEWYLSTL

Nucleotide

• Length: 888 bp

>NTDB_id=203105 CN03_RS14650 WP_075274606.1 3184676..3185563(+) (pilD) [Thalassolituus oleivorans strain K188]
ATGTTTTCTAATGTATTTGCTGAACTCGCACTACTCAGCACACCTTGGCATATCGCCCTGGTGGCGCTGTTAAGCTTATT
GGTCGGTAGTTTTTTAAACGTCGTTATCTTGCGTCTGCCGATTATGATGTTTCGTGGTTGGAAGCAAGAATGCCAATCAT
TAGAAGACGATTTACCCGATCATCCTGCATTGAAGGACTTAAATAAGCCCTTCAATTTAGTTAAACCTGATTCTCACTGC
CCTACTTGCCATGCGCCGGTAAAAGCTTGGCAAAATATCCCCGTAATTAGCTATATATTGCTGCGCGGTCGTTGTGGGAA
ATGCCAGACTAAAATTAGCCCAAGATATCCAGCCGTTGAAATAATCACTGCACTCATGAGTGCAGTGTTATTGGTGCAAT
TTCCTTGGGGTTGGCCCTTAGCGGCTATGTTAGTATTTACATGGCTTCTCATCGCCATGTCAGTTATCGATATTGATCAT
CAAATATTACCCGACACTCTAACATTAGGCCTGCTATGGCTGGGGCTTTTGGTTAACACCCAAGGTCTATTTACAGATTT
AACCTCCGCAGTTTACGGTGCGGCTGTTGGATACGGCTTGCTGTGGAGTATATTTTGGATATTCAAACTGTTAACGGGTA
AAGATGGCATGGGGTTTGGCGATTTCAAGCTACTAGCGGCATTGGGCGCTTGGTTAGGCTTGAGCGCTATTCCTGTGATT
GTTCTGCTGTCGAGTGTCGTTGGTGCTATCGTCGGTATTGCTGGGATTATTATTCTTGGTCGAGACCGCCAACTACCTAT
CCCTTTTGGTCCATACTTAGCCATGGCGGGTTGGATTGCAGCACTATGGGGTGACCAAATCGTAGAGTGGTATTTAAGTA
CGCTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (144-253)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.355	95.593	0.481
pilD	Acinetobacter nosocomialis M2	51.838	92.203	0.478
pilD	Acinetobacter baumannii D1279779	51.838	92.203	0.478
pilD	Neisseria gonorrhoeae MS11	47.931	98.305	0.471
pilD	Vibrio campbellii strain DS40M4	44.523	95.932	0.427