Detailed information NTG0020288

Bioinformatically predicted

Overview

• Name: comYA
• Type: Machinery gene
• Locus tag: DN94_01895
• Genome accession: CP007565
• Coordinates: 337138..338109 (+)
• Length: 323 a.a.
• NCBI ID: AHX74513.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain 138spar
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 332138..343109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DN94_01885	-	332838..336488 (+)	3651	AHX74511.1	DNA-directed RNA polymerase subunit beta'	-
DN94_01890	-	336601..336966 (+)	366	AHX74512.1	dipicolinate synthase	-
DN94_01895	comYA	337138..338109 (+)	972	AHX74513.1	competence protein CglA	Machinery gene
DN94_01905	-	339043..339498 (+)	456	AHX74514.1	competence protein ComGF	-
DN94_01910	-	339476..339847 (+)	372	AHX74515.1	hypothetical protein	-
DN94_01915	comYH	339962..340936 (+)	975	AHX74516.1	adenine methyltransferase	Machinery gene
DN94_01920	-	340968..342161 (+)	1194	AHX74517.1	acetate kinase	-
DN94_01925	-	342313..342519 (+)	207	AHX74518.1	transcriptional regulator	-

Sequence

Protein

• Length: 323 a.a.
• Molecular weight: 36784.25 Da
• Isoelectric Point: 6.9167

>NTDB_id=20288 DN94_01895 AHX74513.1 337138..338109(+) (comYA) [Streptococcus agalactiae strain 138spar]
MVQSLAKHVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFVDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGTRGLYLFSGPVGSGKTTLMYQLASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVDILAEEGHISKKQAQVEKIIPQETTESS
PTF

Nucleotide

• Length: 972 bp

>NTDB_id=20288 DN94_01895 AHX74513.1 337138..338109(+) (comYA) [Streptococcus agalactiae strain 138spar]
ATGGTTCAATCATTAGCAAAGCACGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTGTTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGAAGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCAAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTACAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTAGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATCGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCCCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGGTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAACTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGATA
TCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAAACAACGGAAAGTAGT
CCAACTTTTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (9-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYA	Streptococcus mutans UA159	68.489	96.285	0.659
comYA	Streptococcus mutans UA140	68.489	96.285	0.659
comYA	Streptococcus gordonii str. Challis substr. CH1	63.323	98.762	0.625
comGA/cglA/cilD	Streptococcus mitis NCTC 12261	62.379	96.285	0.601
comGA/cglA/cilD	Streptococcus pneumoniae Rx1	61.415	96.285	0.591
comGA/cglA/cilD	Streptococcus pneumoniae D39	61.415	96.285	0.591
comGA/cglA/cilD	Streptococcus pneumoniae R6	61.415	96.285	0.591
comGA/cglA/cilD	Streptococcus pneumoniae TIGR4	61.415	96.285	0.591
comGA/cglA	Streptococcus sobrinus strain NIDR 6715-7	61.613	95.975	0.591
comGA	Lactococcus lactis subsp. cremoris KW2	50.311	99.69	0.502