Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   DN94_01915 Genome accession   CP007565
Coordinates   339962..340936 (+) Length   324 a.a.
NCBI ID   AHX74516.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334962..345936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_01890 - 336601..336966 (+) 366 AHX74512.1 dipicolinate synthase -
  DN94_01895 comYA 337138..338109 (+) 972 AHX74513.1 competence protein CglA Machinery gene
  DN94_01905 - 339043..339498 (+) 456 AHX74514.1 competence protein ComGF -
  DN94_01910 - 339476..339847 (+) 372 AHX74515.1 hypothetical protein -
  DN94_01915 comYH 339962..340936 (+) 975 AHX74516.1 adenine methyltransferase Machinery gene
  DN94_01920 - 340968..342161 (+) 1194 AHX74517.1 acetate kinase -
  DN94_01925 - 342313..342519 (+) 207 AHX74518.1 transcriptional regulator -
  DN94_01940 - 343956..344726 (-) 771 AHX74519.1 pyrroline-5-carboxylate reductase -
  DN94_01945 - 344796..345863 (-) 1068 AHX74520.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37100.01 Da        Isoelectric Point: 4.4388

>NTDB_id=20289 DN94_01915 AHX74516.1 339962..340936(+) (comYH) [Streptococcus agalactiae strain 138spar]
MNFEKVETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCNLDIVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
VQFIQEDAVRPQILKESDVIISDLPVGYYPNDDIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIE

Nucleotide


Download         Length: 975 bp        

>NTDB_id=20289 DN94_01915 AHX74516.1 339962..340936(+) (comYH) [Streptococcus agalactiae strain 138spar]
ATGAATTTTGAAAAAGTTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTAATTTAGATATTGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTTGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GTCCAATTTATCCAAGAGGATGCCGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGATATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACTTTTGTATATCCGCTAACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAGAATAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(70-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.302

97.222

0.654
  comYH Streptococcus mutans UA140

67.302

97.222

0.654

Multiple sequence alignment