Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BKP64_RS02375 Genome accession   NZ_CP017715
Coordinates   497862..499082 (-) Length   406 a.a.
NCBI ID   WP_070965513.1    Uniprot ID   A0A1D9GHJ2
Organism   Marinobacter salinus strain Hb8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 492862..504082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP64_RS02355 (BKP64_02355) tsaA 494469..495212 (-) 744 WP_070965503.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  BKP64_RS02360 (BKP64_02360) - 495223..496263 (-) 1041 WP_099092572.1 hypothetical protein -
  BKP64_RS02365 (BKP64_02365) coaE 496307..496906 (-) 600 WP_070965506.1 dephospho-CoA kinase -
  BKP64_RS02370 (BKP64_02370) pilD 496910..497785 (-) 876 WP_070965509.1 prepilin peptidase Machinery gene
  BKP64_RS02375 (BKP64_02375) pilC 497862..499082 (-) 1221 WP_070965513.1 type II secretion system F family protein Machinery gene
  BKP64_RS02380 (BKP64_02380) pilB 499085..500800 (-) 1716 WP_070965515.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BKP64_RS02385 (BKP64_02385) - 501197..501697 (+) 501 WP_083329275.1 pilin -
  BKP64_RS02390 (BKP64_02390) - 502024..502467 (+) 444 WP_070965522.1 pilin -
  BKP64_RS02395 (BKP64_02395) - 502524..503885 (-) 1362 WP_070965525.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44508.44 Da        Isoelectric Point: 9.0411

>NTDB_id=202190 BKP64_RS02375 WP_070965513.1 497862..499082(-) (pilC) [Marinobacter salinus strain Hb8]
MAEKAQKLESYVWEGKDRKGNKSKGELTGSNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMAIRNDISSGTSFAGALRKHPKHFDNLYCNLVDSGEKAGALEKMLDRIATYLEKT
ELLKKKVKKAMTYPIAVVVVAIIVTAILLVKVVPQFEQLFQGFGAELPVFTQMVVHLSEWMQTWWFVVLLGIVGTIFLFK
EAVRRSQKFSDIVDKYVLKLPVIGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIDRIKNDVSSGT
QLQASMREQDVFPVMAVQLTAIGEESGNLDEMLEKVAEHYEAVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=202190 BKP64_RS02375 WP_070965513.1 497862..499082(-) (pilC) [Marinobacter salinus strain Hb8]
ATGGCAGAGAAAGCGCAAAAGCTGGAATCGTACGTTTGGGAAGGAAAGGACCGGAAAGGCAATAAGTCCAAGGGCGAGCT
CACAGGCTCAAACCTGGCATTGGTCAAAGCACAGCTTCGCAAGCAGGGGATTATTCCCGATAAGGTCAAGAAAAAGCCCA
AGCCATTGTTCGGGGGCAGCAAGAAAATTACGCCCTTCGACATTGCGATGCTGACACGTCAGCTGGCCACCATGATGAAA
GCGGGTGTTCCGCTAGTTCAGAGCTTTGACATTGTTGCGGACGGTTTAGAAAACAAAGGGCTTCAAGAGCTTGTAATGGC
AATACGGAACGATATTTCTTCAGGCACCAGCTTCGCCGGGGCTCTAAGAAAACATCCGAAGCACTTCGACAATCTGTATT
GCAACCTTGTCGATTCGGGTGAAAAGGCAGGTGCACTGGAAAAAATGCTCGATCGTATAGCGACTTATCTTGAAAAAACT
GAATTGCTCAAGAAGAAAGTCAAAAAAGCAATGACCTACCCAATTGCCGTTGTAGTCGTAGCAATCATCGTAACCGCCAT
TCTTCTGGTGAAAGTCGTACCTCAGTTTGAGCAACTTTTCCAAGGATTTGGCGCGGAACTTCCAGTATTCACTCAAATGG
TTGTACATCTCTCAGAATGGATGCAGACATGGTGGTTTGTTGTTCTTCTTGGAATTGTGGGAACGATTTTTCTTTTCAAG
GAAGCCGTCAGACGGTCTCAAAAGTTCTCGGACATAGTAGATAAATACGTTCTTAAACTACCTGTAATCGGCGAAATTCT
CGACAAATCTGCTGTTGCCAAGTTCGGTCGCGTTCTCTCCACGACCTTCGCAGCAGGCGTTCCTTTGGTAGACGCTCTCG
ACTCTGTTGCGGGCGCCACCGGCAATGCCGTATACCGCGATGCCATTGACCGCATCAAGAACGACGTTTCCAGCGGCACA
CAATTGCAGGCCTCCATGCGCGAGCAAGACGTCTTCCCTGTTATGGCAGTTCAGCTCACTGCCATCGGGGAAGAATCCGG
CAACCTGGATGAAATGTTGGAGAAGGTCGCGGAACACTATGAGGCGGTTGTTGACGATATGGTCGACAACCTCACGGCCC
TCATGGAACCCATGATCATGGCGGTTCTGGGTGTTCTGGTCGGTGGCTTGATCATCGCGATGTACCTGCCAATCTTCCAG
ATGGGTCAGGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9GHJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

67.16

99.754

0.67
  pilC Acinetobacter baumannii D1279779

58.765

99.754

0.586
  pilC Acinetobacter baylyi ADP1

58.128

100

0.581
  pilC Legionella pneumophila strain ERS1305867

52.709

100

0.527
  pilG Neisseria gonorrhoeae MS11

42.716

99.754

0.426
  pilG Neisseria meningitidis 44/76-A

42.365

100

0.424
  pilC Vibrio cholerae strain A1552

40.64

100

0.406
  pilC Vibrio campbellii strain DS40M4

40.049

100

0.401

Multiple sequence alignment