Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SPG_1466 Genome accession   CP001015
Coordinates   1414378..1414848 (-) Length   156 a.a.
NCBI ID   ACF55300.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1409378..1419848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1460 ppa 1409954..1410889 (-) 936 ACF55314.1 manganese-dependent inorganic pyrophosphatase -
  SPG_1461 - 1410917..1411258 (-) 342 ACF56355.1 conserved hypothetical protein -
  SPG_1462 - 1411248..1411997 (-) 750 ACF56780.1 conserved hypothetical protein -
  SPG_1463 - 1412051..1412410 (-) 360 ACF56007.1 hypothetical protein -
  SPG_1464 - 1412412..1413812 (-) 1401 ACF55102.1 Cof family protein/peptidyl-prolyl cis-trans isomerase, cyclophilin type -
  SPG_1465 rpsR 1414107..1414346 (-) 240 ACF54850.1 ribosomal protein S18 -
  SPG_1466 ssbA 1414378..1414848 (-) 471 ACF55300.1 single-stranded DNA-binding protein (ssb) Machinery gene
  SPG_1467 rpsF 1414860..1415150 (-) 291 ACF56838.1 30S ribosomal protein S6 -
  SPG_1468 asnS 1415303..1416646 (-) 1344 ACF55175.1 asparaginyl-tRNA synthetase (asnS) -
  SPG_1469 - 1416665..1417030 (-) 366 ACF55326.1 glyoxalase family protein -
  SPG_1470 aspC 1417023..1418210 (-) 1188 ACF54865.1 aspartate aminotransferase -
  SPG_1471 - 1418207..1418695 (-) 489 ACF55746.1 conserved hypothetical protein -
  SPG_1472 - 1418762..1418878 (-) 117 ACF54778.1 hypothetical protein -
  SPG_1473 - 1419016..1419564 (+) 549 ACF56691.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17340.98 Da        Isoelectric Point: 5.8815

>NTDB_id=20203 SPG_1466 ACF55300.1 1414378..1414848(-) (ssbA) [Streptococcus pneumoniae G54]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAXNFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=20203 SPG_1466 ACF55300.1 1414378..1414848(-) (ssbA) [Streptococcus pneumoniae G54]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGANAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.609
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

69.872

0.372
  ssbB/cilA Streptococcus mitis SK321

52.294

69.872

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae Rx1

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae D39

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae R6

52.294

69.872

0.365

Multiple sequence alignment