Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | SSU05_1071 | Genome accession | CP000407 |
| Coordinates | 1040676..1041029 (-) | Length | 117 a.a. |
| NCBI ID | ABP90037.1 | Uniprot ID | - |
| Organism | Streptococcus suis 05ZYH33 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1035676..1046029
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSU05_1061 | - | 1035844..1036146 (+) | 303 | ABP90027.1 | Uncharacterized protein conserved in bacteria | - |
| SSU05_1062 | - | 1036100..1036219 (+) | 120 | ABP90028.1 | Uncharacterized protein conserved in bacteria | - |
| SSU05_1063 | - | 1036241..1036333 (+) | 93 | ABP90029.1 | Uncharacterized protein conserved in bacteria | - |
| SSU05_1064 | - | 1036305..1036412 (+) | 108 | ABP90030.1 | Uncharacterized protein conserved in bacteria | - |
| SSU05_1065 | - | 1036533..1037534 (+) | 1002 | ABP90031.1 | Phosphoribosylpyrophosphate synthetase | - |
| SSU05_1066 | - | 1037452..1038660 (+) | 1209 | ABP90032.1 | Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes | - |
| SSU05_1067 | - | 1038650..1039006 (+) | 357 | ABP90033.1 | hypothetical protein | - |
| SSU05_1068 | - | 1038975..1039211 (+) | 237 | ABP90034.1 | hypothetical protein | - |
| SSU05_1069 | - | 1039346..1039984 (+) | 639 | ABP90035.1 | AT-rich DNA-binding protein | - |
| SSU05_1070 | - | 1039988..1040524 (+) | 537 | ABP90036.1 | conserved hypothetical protein | - |
| SSU05_1071 | radC | 1040676..1041029 (-) | 354 | ABP90037.1 | DNA repair protein | Machinery gene |
| SSU05_1072 | radC | 1041034..1041201 (-) | 168 | ABP90038.1 | DNA repair protein | Machinery gene |
| SSU05_1073 | radC | 1041206..1041355 (-) | 150 | ABP90039.1 | putative DNA repair protein | Machinery gene |
| SSU05_1074 | - | 1041468..1042175 (-) | 708 | ABP90040.1 | sortase | - |
| SSU05_1075 | - | 1042223..1044667 (-) | 2445 | ABP90041.1 | DNA gyrase subunit A | - |
| SSU05_1076 | - | 1044856..1045839 (+) | 984 | ABP90042.1 | Malate/lactate dehydrogenase | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13417.49 Da Isoelectric Point: 7.4767
>NTDB_id=20167 SSU05_1071 ABP90037.1 1040676..1041029(-) (radC) [Streptococcus suis 05ZYH33]
MGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILHYAVKCMATSIIIVHNHPSGSVQPSRNDLL
FTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF
MGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILHYAVKCMATSIIIVHNHPSGSVQPSRNDLL
FTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF
Nucleotide
Download Length: 354 bp
>NTDB_id=20167 SSU05_1071 ABP90037.1 1040676..1041029(-) (radC) [Streptococcus suis 05ZYH33]
TTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTAGTTGCACTTTATCTCAATACACAGAACCA
GATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCATTACGCAG
TAAAATGTATGGCAACATCGATTATCATCGTTCATAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGATTTGCTA
TTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATAAGGATTA
CTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA
TTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTAGTTGCACTTTATCTCAATACACAGAACCA
GATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCATTACGCAG
TAAAATGTATGGCAACATCGATTATCATCGTTCATAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGATTTGCTA
TTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATAAGGATTA
CTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Streptococcus gordonii str. Challis substr. CH1 |
70.085 |
100 |
0.701 |
| radC | Streptococcus pneumoniae TIGR4 |
68.376 |
100 |
0.684 |
| radC | Streptococcus pneumoniae R6 |
67.521 |
100 |
0.675 |
| radC | Streptococcus pneumoniae D39 |
67.521 |
100 |
0.675 |
| ysxA/radC | Bacillus subtilis subsp. subtilis str. 168 |
51.456 |
88.034 |
0.453 |