Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BKN48_RS19120 Genome accession   NZ_CP017676
Coordinates   3642588..3643838 (+) Length   416 a.a.
NCBI ID   WP_070548983.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3637588..3648838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS19090 (BKN48_19090) yfmH 3637678..3638964 (+) 1287 WP_070548981.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BKN48_RS19095 (BKN48_19095) ymfI 3639019..3639747 (+) 729 WP_015483236.1 elongation factor P 5-aminopentanone reductase -
  BKN48_RS19100 (BKN48_19100) ymfJ 3639828..3640085 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  BKN48_RS19105 (BKN48_19105) - 3640215..3641006 (+) 792 WP_003220998.1 DUF3388 domain-containing protein -
  BKN48_RS19110 (BKN48_19110) rodZ 3641025..3641939 (+) 915 WP_021479276.1 cell shape determination protein RodZ -
  BKN48_RS19115 (BKN48_19115) pgsA 3641989..3642570 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BKN48_RS19120 (BKN48_19120) cinA 3642588..3643838 (+) 1251 WP_070548983.1 competence/damage-inducible protein A Machinery gene
  BKN48_RS19125 (BKN48_19125) recA 3644011..3645057 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  BKN48_RS19130 (BKN48_19130) pbpX 3645225..3646400 (+) 1176 WP_015715899.1 serine hydrolase domain-containing protein -
  BKN48_RS19135 (BKN48_19135) rny 3646676..3648238 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45597.94 Da        Isoelectric Point: 5.3737

>NTDB_id=201532 BKN48_RS19120 WP_070548983.1 3642588..3643838(+) (cinA) [Bacillus subtilis strain VV2]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELFIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=201532 BKN48_RS19120 WP_070548983.1 3642588..3643838(+) (cinA) [Bacillus subtilis strain VV2]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATTTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGAAACGTTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCTGGCTCCAGAACGGGAATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.76

100

0.998
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375

Multiple sequence alignment