Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   CGL27_RS26795 Genome accession   NZ_CP022545
Coordinates   6299069..6300493 (-) Length   474 a.a.
NCBI ID   WP_119990533.1    Uniprot ID   -
Organism   Streptomyces sp. 11-1-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6294069..6305493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGL27_RS26775 (CGL27_26475) - 6294827..6295678 (+) 852 WP_119990528.1 hypothetical protein -
  CGL27_RS26780 (CGL27_26480) - 6295742..6296644 (-) 903 WP_119990529.1 LysR family transcriptional regulator -
  CGL27_RS26785 (CGL27_26485) - 6296744..6297487 (+) 744 WP_119990531.1 SDR family oxidoreductase -
  CGL27_RS26790 (CGL27_26490) disA 6297718..6298776 (-) 1059 WP_050993876.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  CGL27_RS26795 (CGL27_26495) radA/sms 6299069..6300493 (-) 1425 WP_119990533.1 DNA repair protein RadA Machinery gene
  CGL27_RS26800 (CGL27_26500) - 6300751..6302469 (+) 1719 WP_119990535.1 sigma-70 family RNA polymerase sigma factor -
  CGL27_RS26805 (CGL27_26505) - 6302660..6303514 (-) 855 WP_119990537.1 hypothetical protein -
  CGL27_RS26810 (CGL27_26510) - 6303675..6304604 (+) 930 WP_078642788.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 50042.05 Da        Isoelectric Point: 7.4052

>NTDB_id=201533 CGL27_RS26795 WP_119990533.1 6299069..6300493(-) (radA/sms) [Streptomyces sp. 11-1-2]
MAARSSSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTSAALPIGQVDGRQATARVTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYITGEESASQVRLRADRIGALSEHLYLAAETDLS
AVLGHLDSVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRVSKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LQFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGE
VGLAGEVRRVTGVQRRLSEAARLGFTHALVPSDPGRIPDGMRVLEVADIGDALRVLPRRRERGEKTRADAADRG

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=201533 CGL27_RS26795 WP_119990533.1 6299069..6300493(-) (radA/sms) [Streptomyces sp. 11-1-2]
ATGGCTGCCCGTAGCTCCTCCCGCTCATCCGCCAAGGACCGCCCCTCCTACCGCTGTACGGAGTGCGGCTGGACCACCGC
CAAGTGGCTCGGCCGCTGCCCGGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCACGCCCGCGGTGCGCACCACCG
CGCCCGGCCGGGTCACCTCGGCCGCCCTGCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCGCGGGTCACGGGCGTG
GACGAGCTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCGGTCGTGCTGCTCGCCGGGGAGCCCGGGGTCGGCAA
GTCCACACTGCTGCTGGACGTGGCGGCCAAGGCCGCCTCCGAGGAGCACCGCACGCTCTACATCACCGGTGAGGAGTCGG
CGAGTCAGGTGCGGCTGCGCGCCGACCGCATCGGCGCGCTGAGCGAGCATCTCTACCTCGCCGCCGAGACCGACCTGTCC
GCGGTCCTCGGCCATCTCGACTCGGTCAAGCCCTCGCTGCTCGTCCTGGACTCGGTGCAGACCGTCGCCTCGCCCGAGAT
CGACGGCGCGCCGGGCGGGATGGCGCAGGTGCGCGAGGTGGCCGGGGCGCTCATCCGCGTGTCCAAGGAGCGCGGTATGT
CCACGCTGCTGGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGGCCCCGGCTGCTGGAGCATCTGGTCGATGTGGTC
CTGCAGTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGGGTGAAGAACCGCTACGGGGCGACGGACGAGGT
CGGCTGTTTCGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCTCCGGGCTGTTCCTCACCCGCCGCGACGAGC
CGGTGCCCGGCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGGCCGCTGGTGGCCGAGGTGCAGGCGCTCACGGTCGAC
TCCCAGATCCCCTCCCCGCGCCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTTCTGGAGCA
GCGCGGCCGGATCAGCGCGCTGGGCAAGCGGGATATCTACAGCGCCACGGTGGGCGGGGTGAAGCTGTCCGAGCCCGCCG
CGGACCTCGCGGTGGCGCTCGCGCTGGCCAGCGCCGCCAGTGACACCCCGCTGCCCAAGAACCTGGTGGCGATCGGCGAG
GTGGGTCTGGCGGGCGAGGTCCGGCGGGTCACCGGAGTGCAGCGGCGGCTGTCGGAGGCGGCCCGCCTCGGCTTCACCCA
CGCCCTGGTGCCGAGCGACCCGGGCCGGATCCCGGACGGGATGCGGGTGCTGGAGGTCGCGGACATCGGGGACGCGCTGC
GGGTGCTGCCGCGGCGCCGCGAGCGGGGCGAAAAGACGCGGGCGGACGCGGCGGACCGCGGCTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(86-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

Subunit ChlI of Mg-chelatase (ChlI)

(372-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

95.57

0.42
  radA Streptococcus mitis NCTC 12261

42.605

95.57

0.407
  radA Streptococcus pneumoniae D39

42.667

94.937

0.405
  radA Streptococcus pneumoniae TIGR4

42.667

94.937

0.405
  radA Streptococcus pneumoniae R6

42.667

94.937

0.405
  radA Streptococcus pneumoniae Rx1

42.667

94.937

0.405
  radA Streptococcus mitis SK321

43.897

89.873

0.395

Multiple sequence alignment