Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BJP62_RS14495 Genome accession   NZ_CP017668
Coordinates   3056474..3057697 (-) Length   407 a.a.
NCBI ID   WP_070530702.1    Uniprot ID   A0A1D9BGE7
Organism   Jeongeupia sp. USM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3051474..3062697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJP62_RS14465 (BJP62_14465) - 3052258..3052980 (-) 723 WP_168163840.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  BJP62_RS14470 (BJP62_14470) - 3053141..3053893 (-) 753 WP_070530697.1 GNAT family N-acetyltransferase -
  BJP62_RS14475 (BJP62_14475) - 3053978..3054163 (-) 186 WP_145927214.1 DNA gyrase inhibitor YacG -
  BJP62_RS14480 (BJP62_14480) zapD 3054160..3054918 (-) 759 WP_070530698.1 cell division protein ZapD -
  BJP62_RS14485 (BJP62_14485) coaE 3054985..3055599 (-) 615 WP_070530700.1 dephospho-CoA kinase -
  BJP62_RS14490 (BJP62_14490) pilD 3055602..3056468 (-) 867 WP_070532784.1 A24 family peptidase Machinery gene
  BJP62_RS14495 (BJP62_14495) pilC 3056474..3057697 (-) 1224 WP_070530702.1 type II secretion system F family protein Machinery gene
  BJP62_RS14500 (BJP62_14500) pilB 3057726..3059432 (-) 1707 WP_070530704.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BJP62_RS14505 (BJP62_14505) - 3059548..3060804 (-) 1257 WP_070530706.1 HlyC/CorC family transporter -
  BJP62_RS14510 (BJP62_14510) - 3060846..3061652 (-) 807 WP_070530707.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44480.52 Da        Isoelectric Point: 9.9435

>NTDB_id=201403 BJP62_RS14495 WP_070530702.1 3056474..3057697(-) (pilC) [Jeongeupia sp. USM3]
MGVQAKGAAVKELTFVWEGKDRSGKLIKGEMRAAGEAILKNHLRRQGINVVKIKRQRHKGGRRISDQDITMFTRQLATML
KSGVPLLTSFDIVAKGHSNPSVTKLLMDIKNDIETGSSLTQAFRKHPAYFDALYCNLIQAGEQAGILDSLLARLATYKEK
ILGVKKKIKSAMFYPTAVIVAAFVITAVIMIFVIPAFKDLFSSFGADLPGPTLMVIALSDLFVSYWWLIFGGIFGGIWLF
MKTWRRSVAMQIFMDRLLLKLPVLGEIVKNATIARWSRTLSTMFAAGVPLVDSLESVGGAAGNHLYKIATAQIQTEVSTG
TSLTLSMQNTNVFPNMVLQMVSIGEESGALDAMLGKVADYYEEEVDNAVEALSSLMEPIIMVVLGTLIGGLVIAMYLPIF
KMGEAVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=201403 BJP62_RS14495 WP_070530702.1 3056474..3057697(-) (pilC) [Jeongeupia sp. USM3]
ATGGGAGTTCAGGCGAAAGGCGCCGCGGTCAAGGAGCTGACCTTTGTCTGGGAAGGCAAGGACCGCAGCGGCAAGCTGAT
CAAGGGCGAGATGCGCGCCGCCGGCGAGGCGATCCTGAAGAATCACCTGCGCCGCCAGGGCATCAATGTCGTGAAAATCA
AGCGGCAGCGTCACAAGGGCGGCCGGCGGATCAGCGACCAGGACATCACGATGTTCACCCGCCAGCTGGCTACGATGCTC
AAGTCCGGCGTACCGCTGCTGACGTCGTTCGATATCGTGGCCAAGGGGCACAGCAACCCCTCGGTCACCAAGCTGCTGAT
GGACATCAAGAACGACATCGAGACCGGGTCGTCGCTGACGCAGGCGTTCCGCAAGCATCCGGCCTATTTCGATGCGCTGT
ACTGCAACCTGATCCAGGCCGGCGAGCAGGCCGGCATCCTCGACAGCCTGCTGGCACGGCTGGCGACGTACAAGGAAAAG
ATCCTCGGGGTCAAAAAGAAGATCAAGTCGGCGATGTTCTACCCGACTGCGGTCATCGTCGCCGCCTTCGTCATCACCGC
GGTGATCATGATCTTCGTGATCCCGGCATTCAAGGACCTGTTCTCGAGCTTCGGCGCCGACCTGCCGGGCCCGACGCTGA
TGGTGATCGCGCTGTCTGACCTGTTCGTCAGTTACTGGTGGCTGATCTTCGGCGGCATCTTCGGCGGCATCTGGCTGTTC
ATGAAAACCTGGCGCCGTTCGGTCGCGATGCAGATATTCATGGACCGGCTCTTGCTCAAGCTGCCCGTGCTCGGCGAAAT
CGTCAAAAACGCGACGATTGCCCGCTGGTCACGAACGCTGTCGACCATGTTCGCCGCCGGCGTCCCGCTGGTCGACTCGC
TCGAATCGGTCGGCGGCGCCGCCGGCAATCACCTGTACAAGATCGCCACGGCGCAGATCCAGACCGAGGTCAGCACCGGC
ACCAGCCTGACCTTGTCGATGCAGAACACCAACGTTTTCCCGAACATGGTCCTGCAGATGGTCTCGATCGGCGAGGAGTC
CGGCGCGCTCGATGCGATGCTCGGCAAGGTCGCCGACTACTACGAGGAAGAGGTCGACAACGCCGTCGAAGCGCTGTCGA
GCCTGATGGAGCCGATCATCATGGTCGTGCTCGGTACGCTGATCGGCGGACTCGTGATTGCGATGTACCTGCCGATCTTC
AAGATGGGCGAGGCGGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9BGE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.015

97.789

0.518
  pilC Pseudomonas stutzeri DSM 10701

51.621

98.526

0.509
  pilG Neisseria gonorrhoeae MS11

51.5

98.28

0.506
  pilG Neisseria meningitidis 44/76-A

51

98.28

0.501
  pilC Acinetobacter baumannii D1279779

51.005

97.789

0.499
  pilC Acinetobacter baylyi ADP1

50.378

97.543

0.491
  pilC Vibrio cholerae strain A1552

39

98.28

0.383
  pilC Vibrio campbellii strain DS40M4

38.693

97.789

0.378

Multiple sequence alignment