Detailed information NTG0201402

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BJP62_RS14490
• Genome accession: NZ_CP017668
• Coordinates: 3055602..3056468 (-)
• Length: 288 a.a.
• NCBI ID: WP_070532784.1
• Uniprot ID: -
• Organism: Jeongeupia sp. USM3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3050602..3061468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJP62_RS14455 (BJP62_14455)	rplQ	3050922..3051311 (+)	390	WP_070530691.1	50S ribosomal protein L17	-
BJP62_RS14460 (BJP62_14460)	-	3051437..3052261 (+)	825	WP_070530693.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
BJP62_RS14465 (BJP62_14465)	-	3052258..3052980 (-)	723	WP_168163840.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	-
BJP62_RS14470 (BJP62_14470)	-	3053141..3053893 (-)	753	WP_070530697.1	GNAT family N-acetyltransferase	-
BJP62_RS14475 (BJP62_14475)	-	3053978..3054163 (-)	186	WP_145927214.1	DNA gyrase inhibitor YacG	-
BJP62_RS14480 (BJP62_14480)	zapD	3054160..3054918 (-)	759	WP_070530698.1	cell division protein ZapD	-
BJP62_RS14485 (BJP62_14485)	coaE	3054985..3055599 (-)	615	WP_070530700.1	dephospho-CoA kinase	-
BJP62_RS14490 (BJP62_14490)	pilD	3055602..3056468 (-)	867	WP_070532784.1	A24 family peptidase	Machinery gene
BJP62_RS14495 (BJP62_14495)	pilC	3056474..3057697 (-)	1224	WP_070530702.1	type II secretion system F family protein	Machinery gene
BJP62_RS14500 (BJP62_14500)	pilB	3057726..3059432 (-)	1707	WP_070530704.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BJP62_RS14505 (BJP62_14505)	-	3059548..3060804 (-)	1257	WP_070530706.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 30582.52 Da
• Isoelectric Point: 8.4910

>NTDB_id=201402 BJP62_RS14490 WP_070532784.1 3055602..3056468(-) (pilD) [Jeongeupia sp. USM3]
MLALLQTSPPLFGGFLFVLGLLVGSFLNVVIHRLPKMIEADFRHECSCVDLPLDAERPPKPRYNLLVPRSRCPHCGHQIG
ALENIPVLSWLALRGRCSACSAPIGVRYPLVELATAVLTAWVGLHFGPTPAALAGIALTWALIALIAIDADTYLLPDSIT
LPLVWLGLLVNLGGTFVPLSQAVIGAVAGYLLLWSIFWLFKLLTGKEGMGYGDFKLLAALGAWFGWTALPVIVLLSSVAG
AAIGIGQVVAARRGWSKPIPFGPYLGIAGWLTLMWGGTIGGLLFGGLG

Nucleotide

• Length: 867 bp

>NTDB_id=201402 BJP62_RS14490 WP_070532784.1 3055602..3056468(-) (pilD) [Jeongeupia sp. USM3]
ATGCTTGCGCTTTTGCAAACCAGCCCGCCCTTGTTCGGCGGGTTTTTGTTCGTACTCGGCCTGCTGGTCGGCAGTTTTCT
CAACGTGGTGATCCACCGGCTGCCGAAGATGATCGAGGCCGATTTCCGCCACGAGTGCAGCTGTGTCGACCTGCCGCTCG
ACGCCGAACGCCCCCCCAAGCCGCGCTACAACCTGCTGGTGCCGCGTTCGCGCTGCCCGCATTGCGGCCACCAGATCGGC
GCACTCGAGAACATCCCGGTGCTCAGCTGGCTGGCGCTGCGCGGCCGCTGCAGCGCCTGTTCGGCGCCGATCGGCGTGCG
CTATCCGCTGGTCGAGCTGGCAACCGCCGTGCTGACCGCCTGGGTCGGCCTGCATTTCGGCCCGACCCCGGCGGCACTGG
CCGGCATCGCACTGACCTGGGCGCTGATCGCGCTGATCGCCATCGACGCGGACACCTACCTGCTCCCGGACAGCATCACA
TTGCCGCTCGTCTGGCTCGGGCTGCTGGTCAACCTCGGCGGCACCTTCGTACCGCTCTCGCAAGCCGTTATCGGCGCTGT
GGCTGGCTATCTGCTGCTCTGGAGCATCTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTAGCCGCACTCGGAGCGTGGTTCGGCTGGACGGCCCTGCCGGTCATCGTCCTGCTGTCGTCGGTCGCCGGC
GCCGCGATCGGCATCGGCCAGGTCGTCGCGGCCAGACGCGGCTGGAGCAAGCCGATACCGTTCGGCCCCTACCTGGGCAT
CGCCGGCTGGCTCACGCTGATGTGGGGCGGTACGATCGGCGGCTTGCTCTTCGGCGGACTGGGGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.556	96.875	0.538
pilD	Vibrio campbellii strain DS40M4	53.31	99.653	0.531
pilD	Acinetobacter baumannii D1279779	50.185	94.097	0.472
pilD	Neisseria gonorrhoeae MS11	51.751	89.236	0.462
pilD	Acinetobacter nosocomialis M2	49.077	94.097	0.462