Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   A4W84_RS06615 Genome accession   NZ_CP017568
Coordinates   1301896..1302786 (-) Length   296 a.a.
NCBI ID   WP_099947399.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.417     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1296896..1307786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W84_RS06580 (A4W84_06475) - 1297962..1298972 (-) 1011 WP_011374994.1 class I SAM-dependent methyltransferase -
  A4W84_RS06585 (A4W84_06480) - 1299096..1299434 (-) 339 WP_035145011.1 hypothetical protein -
  A4W84_RS06590 (A4W84_06485) comGF 1299397..1299909 (-) 513 WP_035145013.1 competence type IV pilus minor pilin ComGF Machinery gene
  A4W84_RS06595 (A4W84_06490) comGE 1299884..1300189 (-) 306 WP_011374997.1 hypothetical protein Machinery gene
  A4W84_RS06600 (A4W84_06495) comGD 1300176..1300628 (-) 453 WP_056947126.1 competence type IV pilus minor pilin ComGD Machinery gene
  A4W84_RS06605 (A4W84_06500) comGC 1300600..1300899 (-) 300 WP_056947129.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  A4W84_RS06610 (A4W84_06505) comGB 1300896..1301903 (-) 1008 WP_056947133.1 type II secretion system F family protein Machinery gene
  A4W84_RS06615 (A4W84_06510) comGA 1301896..1302786 (-) 891 WP_099947399.1 competence type IV pilus ATPase ComGA Machinery gene
  A4W84_RS06620 (A4W84_06515) - 1302902..1303633 (-) 732 WP_076632059.1 YebC/PmpR family DNA-binding transcriptional regulator -
  A4W84_RS06625 (A4W84_06520) - 1303724..1304224 (-) 501 WP_076632058.1 VanZ family protein -
  A4W84_RS06630 (A4W84_06525) - 1304321..1304695 (+) 375 WP_099947400.1 hypothetical protein -
  A4W84_RS06640 (A4W84_06535) - 1304882..1306282 (-) 1401 WP_251908050.1 hypothetical protein -
  A4W84_RS06645 (A4W84_06540) - 1306282..1307352 (-) 1071 WP_251908051.1 hypothetical protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 32922.77 Da        Isoelectric Point: 6.4932

>NTDB_id=200428 A4W84_RS06615 WP_099947399.1 1301896..1302786(-) (comGA) [Latilactobacillus sakei strain TMW 1.417]
MSTEEKLTTLLKHCAKQRVQDLYFTPTIGGWRLTERRQSDLVTNQELDKPTGTRYLNRLKYMAGMDISETRRAQTGRSEL
QLADQTIYLRLATVGDFLNRESLVIRFIYPIGAIYHCDDQQILAQLTQMSRQAGLILFAGPTGSGKTTSLYHLAQQSMSA
KMVVAIEDPIEIVAPEFLQLQVNDNAGLSYAELLKISLRLRPDTLIIGEIRDLETAQYAVSAALSGHLVLSTIHARSTQG
VVARLLDLGISELQLRACLTGIAYQSLVTKDDVVQAHYELLTGPDYFSKKEGGCDV

Nucleotide


Download         Length: 891 bp        

>NTDB_id=200428 A4W84_RS06615 WP_099947399.1 1301896..1302786(-) (comGA) [Latilactobacillus sakei strain TMW 1.417]
ATGTCAACTGAAGAAAAGCTAACAACTTTATTAAAGCATTGTGCTAAACAACGTGTTCAAGATCTTTATTTTACACCGAC
AATAGGTGGCTGGCGCTTGACGGAACGTCGTCAGAGCGATTTGGTCACCAATCAAGAATTGGATAAACCGACTGGAACGC
GTTATTTAAATCGACTGAAGTATATGGCGGGGATGGATATCAGCGAGACTCGGCGTGCGCAAACCGGCCGCTCGGAATTA
CAGCTAGCCGATCAAACAATTTATTTACGCCTAGCGACGGTCGGGGATTTTTTAAACCGCGAAAGCTTGGTCATTCGGTT
TATCTATCCAATTGGTGCCATCTATCATTGTGATGATCAACAGATCTTGGCGCAATTAACGCAGATGAGTCGACAGGCGG
GCTTAATTCTTTTCGCTGGGCCGACTGGTTCTGGTAAAACGACTAGTCTCTATCATCTGGCCCAACAATCAATGAGTGCC
AAGATGGTGGTTGCTATTGAAGATCCGATTGAAATTGTTGCACCTGAGTTTTTGCAACTGCAGGTTAATGATAATGCGGG
ATTGAGCTACGCCGAGCTATTAAAAATTAGTTTACGACTGCGACCGGATACGCTGATTATCGGTGAAATTCGCGATTTAG
AGACAGCTCAATATGCAGTTTCTGCGGCCTTAAGTGGCCACCTGGTATTGAGTACTATTCACGCTCGGAGTACACAGGGC
GTGGTCGCGCGCTTATTAGATCTTGGTATTTCAGAGCTGCAATTGCGGGCCTGTCTAACGGGAATTGCCTACCAATCGTT
GGTGACAAAAGACGACGTTGTGCAAGCCCATTATGAATTATTAACTGGTCCAGATTATTTCTCAAAAAAAGAAGGTGGTT
GCGATGTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Latilactobacillus sakei subsp. sakei 23K

98.986

100

0.99
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

42.642

89.527

0.382
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

40.876

92.568

0.378
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

42.264

89.527

0.378
  comGA/cglA/cilD Streptococcus pneumoniae R6

42.264

89.527

0.378
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

42.264

89.527

0.378
  comGA/cglA/cilD Streptococcus pneumoniae D39

42.264

89.527

0.378
  comGA Lactococcus lactis subsp. cremoris KW2

37.458

100

0.378
  comYA Streptococcus gordonii str. Challis substr. CH1

40.59

91.554

0.372

Multiple sequence alignment