Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | A4W84_RS06610 | Genome accession | NZ_CP017568 |
| Coordinates | 1300896..1301903 (-) | Length | 335 a.a. |
| NCBI ID | WP_056947133.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain TMW 1.417 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1295896..1306903
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4W84_RS06570 (A4W84_06465) | - | 1296231..1296689 (-) | 459 | WP_011374992.1 | hypothetical protein | - |
| A4W84_RS06575 (A4W84_06470) | - | 1296744..1297940 (-) | 1197 | WP_011374993.1 | acetate/propionate family kinase | - |
| A4W84_RS06580 (A4W84_06475) | - | 1297962..1298972 (-) | 1011 | WP_011374994.1 | class I SAM-dependent methyltransferase | - |
| A4W84_RS06585 (A4W84_06480) | - | 1299096..1299434 (-) | 339 | WP_035145011.1 | hypothetical protein | - |
| A4W84_RS06590 (A4W84_06485) | comGF | 1299397..1299909 (-) | 513 | WP_035145013.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A4W84_RS06595 (A4W84_06490) | comGE | 1299884..1300189 (-) | 306 | WP_011374997.1 | hypothetical protein | Machinery gene |
| A4W84_RS06600 (A4W84_06495) | comGD | 1300176..1300628 (-) | 453 | WP_056947126.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| A4W84_RS06605 (A4W84_06500) | comGC | 1300600..1300899 (-) | 300 | WP_056947129.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| A4W84_RS06610 (A4W84_06505) | comGB | 1300896..1301903 (-) | 1008 | WP_056947133.1 | type II secretion system F family protein | Machinery gene |
| A4W84_RS06615 (A4W84_06510) | comGA | 1301896..1302786 (-) | 891 | WP_099947399.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A4W84_RS06620 (A4W84_06515) | - | 1302902..1303633 (-) | 732 | WP_076632059.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| A4W84_RS06625 (A4W84_06520) | - | 1303724..1304224 (-) | 501 | WP_076632058.1 | VanZ family protein | - |
| A4W84_RS06630 (A4W84_06525) | - | 1304321..1304695 (+) | 375 | WP_099947400.1 | hypothetical protein | - |
| A4W84_RS06640 (A4W84_06535) | - | 1304882..1306282 (-) | 1401 | WP_251908050.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38459.41 Da Isoelectric Point: 9.3969
>NTDB_id=200427 A4W84_RS06610 WP_056947133.1 1300896..1301903(-) (comGB) [Latilactobacillus sakei strain TMW 1.417]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIIGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNRIILWGFLLV
LVLLIIGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=200427 A4W84_RS06610 WP_056947133.1 1300896..1301903(-) (comGB) [Latilactobacillus sakei strain TMW 1.417]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
TGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGCGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATAGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTAACCTTGGTAGCGCAA
TTAGAGGTTGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTATATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATCCGCCAAAAACGCCGCCGAGAAATACG
TGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGCGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCGCATCATATTGTGGGGCTTTTTGTTAGTG
CTAGTCCTTTTGATAATAGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTAACCTTGGTAGCGCAA
TTAGAGGTTGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTATATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
98.806 |
100 |
0.988 |