Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BIZ42_RS05455 Genome accession   NZ_CP017483
Coordinates   1241995..1243254 (+) Length   419 a.a.
NCBI ID   WP_070427451.1    Uniprot ID   -
Organism   Stenotrophomonas sp. LM091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1236995..1248254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ42_RS05440 (BIZ42_05440) pilR 1237911..1239296 (+) 1386 WP_046273839.1 sigma-54 dependent transcriptional regulator Regulator
  BIZ42_RS05445 (BIZ42_05445) pilB 1239389..1241119 (-) 1731 WP_019183939.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BIZ42_RS19975 (BIZ42_05450) - 1241256..1241633 (-) 378 WP_070425792.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BIZ42_RS05455 (BIZ42_05455) pilC 1241995..1243254 (+) 1260 WP_070427451.1 type II secretion system F family protein Machinery gene
  BIZ42_RS05460 (BIZ42_05460) pilD 1243262..1244125 (+) 864 WP_046273837.1 A24 family peptidase Machinery gene
  BIZ42_RS05465 (BIZ42_05465) coaE 1244136..1244747 (+) 612 WP_070425793.1 dephospho-CoA kinase -
  BIZ42_RS05470 (BIZ42_05470) - 1244806..1246128 (-) 1323 WP_172838036.1 HAMP domain-containing sensor histidine kinase -
  BIZ42_RS05475 (BIZ42_05475) - 1246133..1246810 (-) 678 WP_019183933.1 response regulator transcription factor -
  BIZ42_RS05480 (BIZ42_05480) - 1246964..1247452 (-) 489 WP_237393560.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45900.34 Da        Isoelectric Point: 10.1649

>NTDB_id=198708 BIZ42_RS05455 WP_070427451.1 1241995..1243254(+) (pilC) [Stenotrophomonas sp. LM091]
MSVSRSAIKKEPVVRNTMELQPFVWVGTDKRGVKMKGETPAKNANLLRAELRRQGITPNVVKPKPKPLFGAAGSAISTKD
IAFFSRQMAIMMKSGVPIVSSLEIIGTGHKNPRMRKMVESIRTDIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPTMVIAVALIVSAVLLIFVVPQFEDVFKSFGADLPAFTQLIVAASRFMVAWWWL
ILFIVIGAVVGFFFAYKRSPSMQHGMDRFILKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNIFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=198708 BIZ42_RS05455 WP_070427451.1 1241995..1243254(+) (pilC) [Stenotrophomonas sp. LM091]
ATGTCTGTCAGCCGTAGTGCGATCAAGAAAGAGCCCGTGGTCCGCAACACCATGGAGCTGCAACCGTTTGTCTGGGTGGG
GACCGACAAACGCGGCGTCAAGATGAAAGGCGAGACGCCGGCCAAGAATGCGAACCTGCTGCGCGCCGAACTGCGCCGCC
AGGGCATCACGCCCAACGTCGTCAAGCCCAAACCCAAGCCCCTGTTCGGGGCCGCCGGCAGTGCGATCAGCACCAAGGAC
ATCGCCTTCTTCAGCCGCCAGATGGCGATCATGATGAAGTCCGGCGTGCCGATCGTCAGCTCGCTGGAGATCATCGGCAC
GGGACATAAGAACCCACGCATGCGCAAGATGGTGGAGAGCATCCGCACCGATATCGAGGGCGGCTCCTCGCTGTACGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGACGAGCTCTACCGCAACCTGGTCCGGGCCGGCGAAGGCGCCGGTGTGCTGGAA
ACCGTGCTCGACACGGTGGCCAACTACAAAGAGAACATCGAGGCCCTGAAGGGCAAGATCAAGAAGGCCCTGTTCTACCC
GACCATGGTCATCGCAGTGGCGCTGATCGTCAGCGCGGTCCTGCTGATTTTCGTGGTGCCGCAGTTCGAAGACGTGTTCA
AGAGCTTCGGTGCGGACCTGCCCGCCTTCACCCAGCTGATCGTGGCGGCGTCGCGCTTCATGGTGGCGTGGTGGTGGTTG
ATCCTCTTCATCGTCATCGGCGCGGTCGTGGGGTTCTTCTTCGCCTACAAACGCTCGCCCTCCATGCAGCACGGCATGGA
CCGCTTCATCCTGAAGGTGCCGGTGATCGGCCAGATCATGCACAACAGCTCGATCGCCCGGTTCGCCCGGACCACGGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAACAAGGTCTACGAGGAA
GCCGTGCTGCGCATGCGTGACGATGTCTCGGTCGGCTACCCGGTCAACATGGCCATGAAGCAGGTCAACATCTTCCCGCA
CATGGTGGTGCAGATGACCGCCATCGGCGAAGAGGCCGGCGCCCTGGACACCATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAGGTCAACAATGCGGTCGATGCCTTGAGCAGCCTGCTCGAACCGATGATCATGGTCTTCATCGGTGTGGTCGTC
GGCGGTATGGTGGTCGGCATGTACCTGCCCATCTTCAAACTCGCCTCCGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

51.98

96.42

0.501
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.511

0.501
  pilC Acinetobacter baylyi ADP1

48.889

96.659

0.473
  pilC Acinetobacter baumannii D1279779

48.768

96.897

0.473
  pilG Neisseria gonorrhoeae MS11

42.965

94.988

0.408
  pilG Neisseria meningitidis 44/76-A

42.462

94.988

0.403
  pilC Vibrio cholerae strain A1552

39.851

96.42

0.384
  pilC Vibrio campbellii strain DS40M4

38.903

95.704

0.372

Multiple sequence alignment