Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BIZ42_RS05440 Genome accession   NZ_CP017483
Coordinates   1237911..1239296 (+) Length   461 a.a.
NCBI ID   WP_046273839.1    Uniprot ID   A0AAJ6G4V2
Organism   Stenotrophomonas sp. LM091     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232911..1244296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ42_RS05425 (BIZ42_05425) sucD 1233827..1234702 (-) 876 WP_019183943.1 succinate--CoA ligase subunit alpha -
  BIZ42_RS05430 (BIZ42_05430) sucC 1234724..1235893 (-) 1170 WP_070425790.1 ADP-forming succinate--CoA ligase subunit beta -
  BIZ42_RS05435 (BIZ42_05435) - 1236227..1237840 (+) 1614 WP_070425791.1 ATP-binding protein -
  BIZ42_RS05440 (BIZ42_05440) pilR 1237911..1239296 (+) 1386 WP_046273839.1 sigma-54 dependent transcriptional regulator Regulator
  BIZ42_RS05445 (BIZ42_05445) pilB 1239389..1241119 (-) 1731 WP_019183939.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BIZ42_RS19975 (BIZ42_05450) - 1241256..1241633 (-) 378 WP_070425792.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BIZ42_RS05455 (BIZ42_05455) pilC 1241995..1243254 (+) 1260 WP_070427451.1 type II secretion system F family protein Machinery gene
  BIZ42_RS05460 (BIZ42_05460) pilD 1243262..1244125 (+) 864 WP_046273837.1 A24 family peptidase Machinery gene

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50090.56 Da        Isoelectric Point: 6.7314

>NTDB_id=198706 BIZ42_RS05440 WP_046273839.1 1237911..1239296(+) (pilR) [Stenotrophomonas sp. LM091]
MNDTRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVTEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPAPAPLAPEQAARLLGDSPSMDVLRATIGKVAR
SQAPVYILGESGVGKELVARTIHAQSARAPGAFVPVNCGAIPSELMESEFFGHKKGSFSGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSIRPVGAATEVPVDVRILSATHKDLGELVEDGRFRHDLYYRINVIELRVPPLRERRSDLP
ALAASILARLARTHGRPTPLLAPSALDALAQYHFPGNVRELENILERALALAEEDRIGASDLRLPQHAPRFGAGSAPATQ
EEAVVDLPAGNGALPSYIEQMERTAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=198706 BIZ42_RS05440 WP_046273839.1 1237911..1239296(+) (pilR) [Stenotrophomonas sp. LM091]
ATGAATGACACCCGCAGCGCCCTCGTCGTCGATGACGAGCGTGACATCCGCGAACTGCTGGTACTGACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCGGCCAACCTCGCCGAAGCCCGTGAACTGCTGGCCAGCAACCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCGCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCCCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCTCGGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTCAACAACACCGAGCGCCCCGCCCCCGCACCGCTCG
CGCCGGAACAGGCCGCACGCCTGCTCGGCGACTCACCTTCGATGGATGTGCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTTGGCGAATCCGGCGTCGGCAAGGAACTGGTCGCACGCACGATCCACGCGCAGAGCGC
CCGCGCGCCCGGCGCCTTCGTGCCGGTCAACTGCGGCGCCATTCCGTCGGAACTGATGGAAAGTGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCAGCGGCGCGCATGCCGACAAACCTGGCTTGTTCCAGGCGGCGCATGGCGGCACCCTGTTCCTGGAT
GAAGTGGCCGAACTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGATCCGTCCGGTCGGCGC
CGCCACCGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGGCGAACTGGTCGAAGATGGGCGGT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCACTGCGCGAACGCCGCAGCGACCTGCCC
GCGCTGGCCGCCTCGATCCTGGCCCGGCTGGCCCGGACCCACGGCCGCCCGACCCCGCTGCTGGCGCCCTCGGCGCTGGA
CGCCCTGGCCCAGTACCACTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGTGCCCTGGCGCTTGCCGAGG
AAGACCGCATCGGTGCCAGCGACCTGCGCCTGCCCCAGCACGCGCCGCGCTTCGGGGCCGGCAGCGCGCCCGCCACCCAG
GAAGAAGCCGTGGTCGACCTGCCGGCCGGCAATGGCGCCCTGCCCTCCTACATCGAGCAGATGGAGCGCACCGCGATCCA
GAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCCGCACCGCGGCCCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACA
AGCTGAAAAAGCTCGGCATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.801

99.132

0.623
  pilR Acinetobacter baumannii strain A118

48.373

100

0.484

Multiple sequence alignment