Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B195_RS03700 Genome accession   NZ_CP017432
Coordinates   761031..762248 (-) Length   405 a.a.
NCBI ID   WP_003443837.1    Uniprot ID   -
Organism   Pseudomonas sp. Lz4W     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 756031..767248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B195_RS03665 (B195_003610) - 757074..757247 (-) 174 WP_003443851.1 DUF3094 family protein -
  B195_RS03670 (B195_003615) - 757303..757830 (-) 528 WP_003443848.1 MOSC domain-containing protein -
  B195_RS03675 (B195_003620) - 757827..758456 (-) 630 WP_003443844.1 DUF1780 domain-containing protein -
  B195_RS03680 (B195_003625) - 758582..759268 (+) 687 WP_003443841.1 energy-coupling factor ABC transporter permease -
  B195_RS03685 (B195_003630) yacG 759343..759546 (-) 204 WP_003443840.1 DNA gyrase inhibitor YacG -
  B195_RS03690 (B195_003635) coaE 759543..760166 (-) 624 WP_003443839.1 dephospho-CoA kinase -
  B195_RS03695 (B195_003640) pilD 760180..761028 (-) 849 WP_003443838.1 A24 family peptidase Machinery gene
  B195_RS03700 (B195_003645) pilC 761031..762248 (-) 1218 WP_003443837.1 type II secretion system F family protein Machinery gene
  B195_RS03705 (B195_003650) - 762470..762871 (+) 402 WP_003443834.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  B195_RS03710 (B195_003655) - 763114..764610 (+) 1497 WP_003443832.1 DNA-3-methyladenine glycosylase 2 -
  B195_RS03715 (B195_003660) - 764607..765104 (+) 498 WP_003443830.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  B195_RS03720 (B195_003665) nadC 765213..766061 (-) 849 WP_003443828.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43842.39 Da        Isoelectric Point: 9.6640

>NTDB_id=198088 B195_RS03700 WP_003443837.1 761031..762248(-) (pilC) [Pseudomonas sp. Lz4W]
MPAQADKTSVYRWQGTDRQGAPASGESTGHSQAMIRARLRRQGITVSKIRRHTDRDTPAGKPVKAVQITLFTRQLATLIR
AGIPLLQALEVIANGLEHQAMGKLVNDLQQDINAGISLASALRKRPAQFDALFCNLIEAGEQAGALDVLLERIATYKEKT
ETLKNKIKKAMTYPIAVLVVASGVCAILLIEVVPQFQRVFDSFDAQLPLFTLWVIAVSQALQQFGLWLLAGAGLGCAALG
YRYKHCAALRQRLDRWLLKLPVLGNLLHFSAIARFARTLSTTVAAGVPLLEALHAVAGATGNSLFKDAVLQLRQRVATGS
QIHVAMGDVGVFPGMVIQMTAIGEESGTLDEMLNHVATYYESQVDTLVDNLTALMEPAIMVVLGVMVGGLVIAMYLPIFK
LGQVI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=198088 B195_RS03700 WP_003443837.1 761031..762248(-) (pilC) [Pseudomonas sp. Lz4W]
ATGCCAGCACAGGCAGATAAAACCAGTGTTTATCGGTGGCAAGGCACTGATCGCCAAGGCGCTCCGGCCAGTGGTGAAAG
CACTGGCCACAGCCAGGCAATGATCCGGGCCCGGTTACGCCGACAAGGTATTACCGTTAGTAAAATTCGCCGGCATACAG
ACCGCGACACCCCCGCAGGCAAACCCGTCAAAGCCGTACAGATCACACTTTTCACTCGCCAGTTGGCCACGCTGATCAGA
GCCGGCATCCCGCTGCTGCAAGCGCTGGAGGTAATTGCCAACGGCCTGGAACATCAGGCCATGGGCAAGCTGGTGAATGA
TCTGCAGCAGGACATCAATGCAGGTATCAGCCTGGCAAGTGCGTTGCGAAAAAGGCCGGCACAGTTCGATGCATTGTTCT
GCAATCTGATCGAGGCTGGCGAGCAGGCCGGGGCACTGGATGTGTTGCTGGAGCGGATCGCGACGTACAAGGAAAAAACC
GAAACTCTGAAAAACAAAATCAAAAAGGCCATGACCTACCCCATAGCCGTGCTGGTGGTGGCATCAGGGGTCTGCGCAAT
TTTATTGATTGAAGTGGTGCCGCAGTTCCAGCGCGTGTTCGACTCTTTTGACGCCCAACTGCCACTCTTCACGCTCTGGG
TAATCGCTGTCTCCCAGGCGCTGCAACAGTTCGGCCTGTGGCTGCTCGCCGGGGCCGGCCTGGGGTGTGCGGCTCTGGGC
TATCGCTACAAACACTGCGCGGCGTTGCGTCAGCGCCTTGATCGCTGGCTGTTGAAACTCCCGGTGCTGGGCAACCTGCT
GCATTTTTCGGCCATCGCCCGTTTTGCCCGCACGCTGTCCACCACCGTTGCCGCCGGAGTTCCATTGCTTGAAGCGCTGC
ACGCAGTCGCCGGAGCCACGGGCAACAGCCTGTTCAAAGACGCGGTACTGCAACTCAGGCAGCGGGTGGCAACAGGCAGT
CAGATCCATGTTGCCATGGGCGATGTCGGAGTATTCCCGGGCATGGTGATCCAGATGACAGCAATTGGCGAAGAGTCCGG
CACACTGGACGAGATGCTCAACCACGTAGCCACCTATTATGAGAGCCAGGTCGACACTCTGGTCGATAACCTGACAGCAT
TGATGGAGCCGGCAATCATGGTGGTACTCGGCGTCATGGTTGGCGGACTGGTGATCGCCATGTATTTACCGATTTTCAAA
TTGGGCCAAGTGATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.774

100

0.56
  pilC Acinetobacter baylyi ADP1

50

98.272

0.491
  pilC Acinetobacter baumannii D1279779

49.257

99.753

0.491
  pilC Legionella pneumophila strain ERS1305867

48.049

100

0.486
  pilC Vibrio cholerae strain A1552

40.199

99.506

0.4
  pilC Vibrio campbellii strain DS40M4

39.454

99.506

0.393
  pilC Thermus thermophilus HB27

37.811

99.259

0.375
  pilG Neisseria gonorrhoeae MS11

39.323

94.815

0.373
  pilG Neisseria meningitidis 44/76-A

38.601

95.309

0.368

Multiple sequence alignment