Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CD007_RS04165 Genome accession   NZ_CP021903
Coordinates   815706..816422 (+) Length   238 a.a.
NCBI ID   WP_041851175.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 810706..821422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS04150 (CD007_04150) yfkQ 810787..812328 (-) 1542 WP_041851177.1 spore germination protein -
  CD007_RS04155 (CD007_04155) treP 812517..813929 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  CD007_RS04160 (CD007_04160) treC 814000..815685 (+) 1686 WP_041851176.1 alpha,alpha-phosphotrehalase -
  CD007_RS04165 (CD007_04165) treR 815706..816422 (+) 717 WP_041851175.1 trehalose operon repressor Regulator
  CD007_RS04170 (CD007_04170) hypO 816562..817227 (+) 666 WP_043940068.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27783.78 Da        Isoelectric Point: 7.5088

>NTDB_id=198087 CD007_RS04165 WP_041851175.1 815706..816422(+) (treR) [Bacillus subtilis strain ge28]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLAPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=198087 CD007_RS04165 WP_041851175.1 815706..816422(+) (treR) [Bacillus subtilis strain ge28]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGCGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAGTATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTTCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(8-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416

Multiple sequence alignment