Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XCCCN12_RS17425 Genome accession   NZ_CP017310
Coordinates   3807338..3808594 (+) Length   418 a.a.
NCBI ID   WP_075285409.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris str. CN12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3802338..3813594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCCCN12_RS17405 pilR 3802485..3803879 (+) 1395 WP_162808570.1 sigma-54 dependent transcriptional regulator Regulator
  XCCCN12_RS17410 pilB 3804297..3806003 (-) 1707 WP_187305920.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XCCCN12_RS17415 - 3806062..3806472 (-) 411 WP_075285411.1 pilin -
  XCCCN12_RS17420 - 3806552..3807001 (-) 450 WP_075285410.1 pilin -
  XCCCN12_RS17425 pilC 3807338..3808594 (+) 1257 WP_075285409.1 type II secretion system F family protein Machinery gene
  XCCCN12_RS17430 - 3808600..3809463 (+) 864 WP_075285408.1 A24 family peptidase -
  XCCCN12_RS17435 coaE 3809477..3810100 (+) 624 WP_075285407.1 dephospho-CoA kinase -
  XCCCN12_RS17450 - 3811836..3812237 (+) 402 WP_040940795.1 SymE family type I addiction module toxin -
  XCCCN12_RS17455 - 3812312..3812602 (+) 291 WP_011038219.1 DUF1778 domain-containing protein -
  XCCCN12_RS17460 - 3812599..3813090 (+) 492 WP_011038220.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45523.96 Da        Isoelectric Point: 10.3308

>NTDB_id=197564 XCCCN12_RS17425 WP_075285409.1 3807338..3808594(+) (pilC) [Xanthomonas campestris pv. campestris str. CN12]
MAAVRGVVKTKPTLQLEQASPFVWQGTDKRGVKMKGEQTAKNANLLRAELRRQGITPTVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRADIEGGSSLHEAVSRHPVQFDELYRNLVKAGEGAGVLET
VLDTIATYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEDVFKGFGAELPAFTQIIVNMSRFMVSWWWLI
LFVVVVAVIGFIFAYKRSPSMQHGMDRVILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYETA
VLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=197564 XCCCN12_RS17425 WP_075285409.1 3807338..3808594(+) (pilC) [Xanthomonas campestris pv. campestris str. CN12]
ATGGCAGCAGTACGTGGTGTGGTCAAGACGAAGCCGACCTTGCAATTAGAGCAGGCTAGTCCGTTTGTCTGGCAGGGAAC
GGACAAGCGCGGCGTGAAGATGAAGGGGGAGCAGACGGCAAAAAACGCCAATCTGCTACGTGCGGAACTCCGCAGGCAGG
GGATAACGCCTACTGTTGTAAAGGTAAAGCCGAAGCCGTTATTTGGCGCGGCTGGCAAGAAGGTTTCCGCTAAGGACATC
TCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCCGGAGTTCCGATCGTTGGGGCGCTTGAGATCATCGGCAGCGG
CCAGAAAAATCCGCGCATGCGGAACATGGTTGGGCAAATCCGCGCAGACATCGAAGGCGGTTCTTCACTGCATGAAGCAG
TCAGCAGGCACCCCGTGCAGTTTGACGAGCTCTACAGGAACCTCGTTAAAGCCGGCGAAGGTGCGGGCGTTTTGGAGACG
GTGCTGGACACCATTGCGACATACAAGGAGAACATCGAGGCGCTGAAGGGCAAGATCAAAAAAGCCTTGTTCTATCCGGC
AATGGTTGTCGCAGTAGCACTAATCGTCAGCGCGATTCTGCTCATCTTTGTGGTACCTCAATTTGAGGACGTGTTCAAGG
GCTTTGGCGCGGAACTGCCCGCCTTCACTCAGATCATTGTGAACATGTCGCGGTTCATGGTGTCGTGGTGGTGGCTGATT
CTTTTTGTTGTGGTCGTCGCCGTCATTGGCTTCATCTTCGCCTACAAACGCTCCCCCTCAATGCAACACGGCATGGACCG
GGTCATCCTCAAAGTGCCGATCATCGGCCAAATCATGCACAACAGTTCCATTGCACGTTTTGCACGGACGACTGCAGTGA
CATTCAAGGCAGGCGTACCATTGGTCGAAGCATTGAGCATCGTGGCTGGCGCAACCGGCAACTCGGTATACGAGACTGCC
GTACTACGGATGCGGGACGATGTGTCAGTGGGCTACCCTGTGAACATGGCAATGAAACAGGTCAATCTGTTCCCGCACAT
GGTGGTGCAGATGACTGCCATCGGCGAAGAAGCGGGCGCACTGGATGCCATGCTGTTCAAGGTAGCGGAGTACTTCGAGC
AAGAGGTCAACAATGCGGTCGACGCGCTGAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGAACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.513

95.215

0.5
  pilC Legionella pneumophila strain ERS1305867

51.478

97.129

0.5
  pilC Acinetobacter baylyi ADP1

50.882

94.976

0.483
  pilC Acinetobacter baumannii D1279779

50.378

94.976

0.478
  pilG Neisseria gonorrhoeae MS11

43.467

95.215

0.414
  pilG Neisseria meningitidis 44/76-A

42.965

95.215

0.409
  pilC Vibrio cholerae strain A1552

41.363

98.325

0.407
  pilC Vibrio campbellii strain DS40M4

40.399

95.933

0.388

Multiple sequence alignment