Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XCCCN12_RS17405 Genome accession   NZ_CP017310
Coordinates   3802485..3803879 (+) Length   464 a.a.
NCBI ID   WP_162808570.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris str. CN12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3797485..3808879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCCCN12_RS17380 - 3797542..3797844 (-) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  XCCCN12_RS17385 - 3797848..3798258 (-) 411 WP_029628876.1 DNA-binding protein -
  XCCCN12_RS17390 sucD 3798362..3799237 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  XCCCN12_RS17395 sucC 3799262..3800431 (-) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  XCCCN12_RS17400 - 3800665..3802275 (+) 1611 WP_040940804.1 HAMP domain-containing sensor histidine kinase -
  XCCCN12_RS17405 pilR 3802485..3803879 (+) 1395 WP_162808570.1 sigma-54 dependent transcriptional regulator Regulator
  XCCCN12_RS17410 pilB 3804297..3806003 (-) 1707 WP_187305920.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XCCCN12_RS17415 - 3806062..3806472 (-) 411 WP_075285411.1 pilin -
  XCCCN12_RS17420 - 3806552..3807001 (-) 450 WP_075285410.1 pilin -
  XCCCN12_RS17425 pilC 3807338..3808594 (+) 1257 WP_075285409.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50351.73 Da        Isoelectric Point: 6.5131

>NTDB_id=197562 XCCCN12_RS17405 WP_162808570.1 3802485..3803879(+) (pilR) [Xanthomonas campestris pv. campestris str. CN12]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=197562 XCCCN12_RS17405 WP_162808570.1 3802485..3803879(+) (pilR) [Xanthomonas campestris pv. campestris str. CN12]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGTCACA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTACCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGAGCGAGACGCTGGTAGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTTACCCAGTCCGCGCTCGA
TGCCCTGAACCAATACGGATTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGTTGGGCATCACGTTTCGGGCGC
TACGCTACAAACTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment