Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BHS01_RS10120 Genome accession   NZ_CP017195
Coordinates   2072677..2073072 (-) Length   131 a.a.
NCBI ID   WP_109835137.1    Uniprot ID   A0A7L4WI57
Organism   Lactococcus paracarnosus strain TMW 2.1615     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2068923..2095453 2072677..2073072 within 0


Gene organization within MGE regions


Location: 2068923..2095453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS01_RS10105 (BHS01_10110) - 2068923..2070215 (-) 1293 WP_079507599.1 adenylosuccinate synthase -
  BHS01_RS10110 (BHS01_10115) groL 2070478..2072109 (-) 1632 WP_109835136.1 chaperonin GroEL -
  BHS01_RS10115 (BHS01_10120) groES 2072154..2072438 (-) 285 WP_096814184.1 co-chaperone GroES -
  BHS01_RS10120 (BHS01_10125) ssbB 2072677..2073072 (-) 396 WP_109835137.1 single-stranded DNA-binding protein Machinery gene
  BHS01_RS10125 (BHS01_10130) ytpR 2073129..2073752 (-) 624 WP_109835138.1 YtpR family tRNA-binding protein -
  BHS01_RS10130 (BHS01_10135) - 2073749..2074069 (-) 321 WP_109835139.1 thioredoxin family protein -
  BHS01_RS10135 (BHS01_10140) - 2074056..2074370 (-) 315 WP_047916364.1 hypothetical protein -
  BHS01_RS10140 (BHS01_10145) pepA 2074504..2075589 (+) 1086 WP_109835140.1 glutamyl aminopeptidase -
  BHS01_RS10145 (BHS01_10150) - 2075666..2078062 (-) 2397 WP_162542444.1 glucosaminidase domain-containing protein -
  BHS01_RS10150 (BHS01_10155) - 2078217..2079749 (-) 1533 WP_109835142.1 lipopolysaccharide biosynthesis protein -
  BHS01_RS10155 (BHS01_10160) - 2080091..2081104 (-) 1014 WP_109835143.1 glycosyl transferase -
  BHS01_RS10160 (BHS01_10165) - 2081150..2082163 (-) 1014 WP_109835144.1 capsular polysaccharide synthesis protein -
  BHS01_RS10165 (BHS01_10170) - 2082231..2082599 (-) 369 WP_109835145.1 DUF2304 domain-containing protein -
  BHS01_RS10170 (BHS01_10175) - 2082596..2083327 (-) 732 WP_109835146.1 glycosyltransferase family 2 protein -
  BHS01_RS10175 (BHS01_10180) - 2083385..2084170 (-) 786 WP_109835147.1 glycosyltransferase family 2 protein -
  BHS01_RS10180 (BHS01_10185) - 2084187..2085779 (-) 1593 WP_109835148.1 DUF2142 domain-containing protein -
  BHS01_RS10185 (BHS01_10190) - 2085898..2086857 (-) 960 WP_109835585.1 glycosyltransferase family A protein -
  BHS01_RS11545 - 2086850..2088094 (-) 1245 WP_245404454.1 glycosyltransferase family 1 protein -
  BHS01_RS11550 - 2088113..2089828 (-) 1716 Protein_2027 rhamnan synthesis F family protein -
  BHS01_RS10200 (BHS01_10200) - 2089828..2091210 (-) 1383 WP_109835149.1 glycosyltransferase family 2 protein -
  BHS01_RS10205 (BHS01_10205) - 2091392..2092600 (-) 1209 WP_109835150.1 ABC transporter ATP-binding protein -
  BHS01_RS10210 (BHS01_10210) - 2092601..2093389 (-) 789 WP_109835151.1 ABC transporter permease -
  BHS01_RS10215 (BHS01_10215) - 2093386..2094321 (-) 936 WP_109835152.1 glycosyltransferase family 2 protein -
  BHS01_RS10220 (BHS01_10220) cps2T 2094311..2095453 (-) 1143 WP_109835153.1 beta 1-4 rhamnosyltransferase Cps2T -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14682.81 Da        Isoelectric Point: 7.1669

>NTDB_id=196591 BHS01_RS10120 WP_109835137.1 2072677..2073072(-) (ssbB) [Lactococcus paracarnosus strain TMW 2.1615]
MMNKSLFIGRLTAQPELRKTATEKSVIRSTLAVNRQFKTADGERGVDFLSIIIWGKSAELFVAYAQKGSLISIEGELRSR
RYDDKSGVTHYVTEVLCHQFNLLESKAAVALRENNVTSLEDVMLATDDLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=196591 BHS01_RS10120 WP_109835137.1 2072677..2073072(-) (ssbB) [Lactococcus paracarnosus strain TMW 2.1615]
ATGATGAATAAAAGTTTATTTATTGGTCGATTAACTGCACAACCGGAATTGAGAAAAACAGCAACGGAAAAATCTGTCAT
CCGCAGTACACTTGCGGTAAATAGACAGTTTAAAACTGCTGATGGTGAACGTGGTGTCGATTTTCTATCGATTATCATAT
GGGGGAAATCAGCAGAGTTATTTGTAGCCTATGCCCAGAAAGGTAGCCTGATATCGATTGAAGGTGAGCTTCGTAGTAGA
CGGTACGATGATAAATCTGGTGTCACACATTATGTCACCGAAGTTTTATGTCACCAGTTTAATTTATTGGAGAGTAAGGC
TGCAGTTGCTTTAAGAGAAAATAATGTCACATCATTAGAAGATGTGATGTTAGCAACAGATGACCTACCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L4WI57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

58.333

100

0.588
  ssbA Streptococcus mutans UA159

56.061

100

0.565
  ssbB/cilA Streptococcus mitis NCTC 12261

54.545

100

0.55
  ssbB/cilA Streptococcus pneumoniae Rx1

53.788

100

0.542
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.788

100

0.542
  ssbB/cilA Streptococcus pneumoniae D39

53.788

100

0.542
  ssbB/cilA Streptococcus pneumoniae R6

53.788

100

0.542
  ssbB/cilA Streptococcus mitis SK321

53.03

100

0.534
  ssbB Lactococcus lactis subsp. cremoris KW2

60

87.786

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

42.478

86.26

0.366

Multiple sequence alignment