Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BHS00_RS00745 Genome accession   NZ_CP017194
Coordinates   142483..142878 (+) Length   131 a.a.
NCBI ID   WP_079507607.1    Uniprot ID   -
Organism   Lactococcus carnosus strain TMW 2.1612     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 122284..147901 142483..142878 within 0


Gene organization within MGE regions


Location: 122284..147901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS00_RS00655 (BHS00_00650) rfbB 122284..123333 (+) 1050 WP_079507639.1 dTDP-glucose 4,6-dehydratase -
  BHS00_RS00660 (BHS00_00655) rfbD 123330..124184 (+) 855 WP_079507637.1 dTDP-4-dehydrorhamnose reductase -
  BHS00_RS00665 (BHS00_00660) cps2T 124363..125505 (+) 1143 WP_079507635.1 beta 1-4 rhamnosyltransferase Cps2T -
  BHS00_RS00670 (BHS00_00665) - 125495..126433 (+) 939 WP_079507633.1 glycosyltransferase family 2 protein -
  BHS00_RS00675 (BHS00_00670) - 126520..127329 (+) 810 WP_079507631.1 ABC transporter permease -
  BHS00_RS00680 (BHS00_00675) - 127339..128571 (+) 1233 WP_079507629.1 ABC transporter ATP-binding protein -
  BHS00_RS00685 (BHS00_00680) - 128581..129957 (+) 1377 WP_079507627.1 glycosyltransferase -
  BHS00_RS00690 (BHS00_00685) - 129976..131760 (+) 1785 WP_191245652.1 rhamnan synthesis F family protein -
  BHS00_RS00695 (BHS00_00690) - 131932..133521 (+) 1590 WP_079507623.1 DUF2142 domain-containing protein -
  BHS00_RS00700 (BHS00_00695) - 133544..134329 (+) 786 WP_079507621.1 glycosyltransferase family A protein -
  BHS00_RS00705 (BHS00_00700) - 134386..135117 (+) 732 WP_079507619.1 glycosyltransferase family 2 protein -
  BHS00_RS00710 (BHS00_00705) - 135114..135482 (+) 369 WP_099046827.1 DUF2304 domain-containing protein -
  BHS00_RS00715 (BHS00_00710) - 135683..137215 (+) 1533 WP_079507617.1 lipopolysaccharide biosynthesis protein -
  BHS00_RS10670 (BHS00_00715) - 137373..139841 (+) 2469 WP_143465023.1 glucosaminidase domain-containing protein -
  BHS00_RS00725 (BHS00_00720) pepA 139966..141051 (-) 1086 WP_079507613.1 glutamyl aminopeptidase -
  BHS00_RS00730 (BHS00_00725) - 141185..141499 (+) 315 WP_047916364.1 hypothetical protein -
  BHS00_RS00735 (BHS00_00730) - 141486..141806 (+) 321 WP_079507611.1 thioredoxin family protein -
  BHS00_RS00740 (BHS00_00735) ytpR 141803..142426 (+) 624 WP_079507609.1 YtpR family tRNA-binding protein -
  BHS00_RS00745 (BHS00_00740) ssbB 142483..142878 (+) 396 WP_079507607.1 single-stranded DNA-binding protein Machinery gene
  BHS00_RS00750 (BHS00_00745) - 142943..144214 (+) 1272 WP_079507605.1 CHAP domain-containing protein -
  BHS00_RS00755 (BHS00_00750) groES 144386..144670 (+) 285 WP_079507603.1 co-chaperone GroES -
  BHS00_RS00760 (BHS00_00755) groL 144715..146346 (+) 1632 WP_079507601.1 chaperonin GroEL -
  BHS00_RS00765 (BHS00_00760) - 146609..147901 (+) 1293 WP_079507599.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14591.75 Da        Isoelectric Point: 7.1671

>NTDB_id=196520 BHS00_RS00745 WP_079507607.1 142483..142878(+) (ssbB) [Lactococcus carnosus strain TMW 2.1612]
MMNKSLLIGRLTAAPELRKTATEKSVIRSTLAVNRQFKTAEGERGVDFLSIVIWGKSAELFVAYAQKGSLISIEGELRSR
RYDDKSGVTHYVTEVLCHQFNLLESKAAVALRENNLTSLEDVMLASDDLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=196520 BHS00_RS00745 WP_079507607.1 142483..142878(+) (ssbB) [Lactococcus carnosus strain TMW 2.1612]
ATGATGAATAAAAGTTTATTGATTGGTCGATTAACTGCAGCGCCTGAACTGAGAAAAACAGCAACAGAAAAATCTGTCAT
CCGTAGCACACTTGCGGTAAATAGACAGTTTAAAACTGCTGAAGGCGAACGCGGTGTTGACTTCTTATCGATTGTGATAT
GGGGGAAATCAGCAGAGTTATTTGTAGCCTATGCCCAAAAAGGTAGCCTGATATCGATTGAAGGTGAGCTTCGTAGTAGA
CGTTATGATGATAAATCTGGTGTCACACATTATGTCACCGAAGTTTTATGTCACCAGTTTAATTTATTGGAGAGCAAGGC
TGCAGTTGCTTTAAGAGAAAATAATCTCACGTCATTAGAAGATGTGATGTTAGCATCAGATGACCTACCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

59.848

100

0.603
  ssbA Streptococcus mutans UA159

56.818

100

0.573
  ssbB/cilA Streptococcus mitis NCTC 12261

55.303

100

0.557
  ssbB/cilA Streptococcus pneumoniae TIGR4

55.303

100

0.557
  ssbB/cilA Streptococcus pneumoniae Rx1

54.545

100

0.55
  ssbB/cilA Streptococcus pneumoniae R6

54.545

100

0.55
  ssbB/cilA Streptococcus mitis SK321

54.545

100

0.55
  ssbB/cilA Streptococcus pneumoniae D39

54.545

100

0.55
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382

Multiple sequence alignment