Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BGI51_RS02745 Genome accession   NZ_CP017024
Coordinates   587411..588628 (-) Length   405 a.a.
NCBI ID   WP_187980236.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain KNF2016     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 585932..604382 587411..588628 within 0


Gene organization within MGE regions


Location: 585932..604382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGI51_RS02735 (BGI51_02705) coaE 585932..586543 (-) 612 WP_187980235.1 dephospho-CoA kinase -
  BGI51_RS02740 (BGI51_02710) - 586540..587411 (-) 872 Protein_541 A24 family peptidase -
  BGI51_RS02745 (BGI51_02715) pilC 587411..588628 (-) 1218 WP_187980236.1 type II secretion system F family protein Machinery gene
  BGI51_RS02750 (BGI51_02720) pilB 588840..590534 (-) 1695 WP_187980237.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BGI51_RS02755 - 590747..591211 (+) 465 WP_187980238.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BGI51_RS02760 (BGI51_02725) - 591280..592317 (-) 1038 WP_187980239.1 SDR family oxidoreductase -
  BGI51_RS02770 (BGI51_02735) cyoA 593090..594013 (+) 924 WP_133861286.1 ubiquinol oxidase subunit II -
  BGI51_RS02775 (BGI51_02740) cyoB 594017..596005 (+) 1989 WP_158896248.1 cytochrome o ubiquinol oxidase subunit I -
  BGI51_RS02780 (BGI51_02745) - 596010..596624 (+) 615 WP_133861288.1 cytochrome o ubiquinol oxidase subunit III -
  BGI51_RS02785 (BGI51_02750) cyoD 596624..596962 (+) 339 WP_133861289.1 cytochrome o ubiquinol oxidase subunit IV -
  BGI51_RS02790 (BGI51_02755) cyoE 596974..597861 (+) 888 WP_252977194.1 heme o synthase -
  BGI51_RS02795 - 597931..601848 (-) 3918 WP_252977195.1 pilus assembly protein -
  BGI51_RS02800 (BGI51_02765) - 601845..602423 (-) 579 WP_252977196.1 PilX N-terminal domain-containing pilus assembly protein -
  BGI51_RS02805 (BGI51_02770) - 602456..603253 (-) 798 WP_187980242.1 PilW family protein -
  BGI51_RS02810 (BGI51_02775) pilV 603255..603848 (-) 594 WP_187980243.1 type IV pilus modification protein PilV -
  BGI51_RS02815 (BGI51_02780) - 603849..604382 (-) 534 WP_187980244.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44416.27 Da        Isoelectric Point: 9.8267

>NTDB_id=194567 BGI51_RS02745 WP_187980236.1 587411..588628(-) (pilC) [Pseudomonas oryzihabitans strain KNF2016]
MADKAIKMSSFTWEGTDRKGTKVKGEMTGLNPALIKAQLRKQGINPTRVRKKSMSIFGKGKKIKPMDIALFTRQLATMMN
AGVPLLQAFDIISEGFENLSMRKLVDDIKQDVSAGNSLANSLRKQPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKKKIKKAMTYPAAVIVVAIIVSAILLIKVVPQFQSVFEGFGAQLPAFTLFVIGISEILQEWWLLVLGGLFLLAFVLR
NFYKRSERFRDATDRGLLKIPLIGSILYKSAIARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVEKIKGDVSTGM
QLNFSMRTTGVFSSMAIQMTAIGEESGSLDEMLSKVATFYEDEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=194567 BGI51_RS02745 WP_187980236.1 587411..588628(-) (pilC) [Pseudomonas oryzihabitans strain KNF2016]
ATGGCTGATAAAGCTATCAAGATGAGCAGCTTCACCTGGGAGGGGACCGACCGCAAAGGGACCAAGGTGAAAGGCGAGAT
GACAGGCCTGAATCCCGCGCTGATCAAAGCACAGTTGCGCAAGCAGGGGATCAACCCAACCCGGGTGCGCAAGAAGTCGA
TGTCGATATTCGGCAAGGGCAAAAAGATCAAGCCCATGGACATCGCGCTGTTCACCAGACAGCTGGCGACCATGATGAAC
GCGGGCGTACCTCTGTTGCAAGCCTTTGACATCATTAGCGAGGGCTTTGAAAATCTAAGTATGCGGAAGCTGGTAGATGA
TATTAAGCAGGATGTTTCCGCAGGCAATAGTTTGGCCAATTCTTTACGCAAGCAGCCGCAATACTTTGATGATCTTTATT
GCAATCTTGTAGATGCTGGTGAGCAGTCTGGCGCGCTGGAAACCCTATTGGATAGAGTTGCCACCTATAAGGAAAAAACG
GAAGCGCTTAAGAAGAAAATAAAGAAAGCGATGACCTATCCAGCGGCGGTCATCGTCGTTGCAATAATTGTATCAGCTAT
TTTGTTGATCAAGGTGGTGCCGCAGTTTCAGTCAGTATTTGAAGGCTTCGGAGCGCAGTTGCCAGCATTCACACTGTTCG
TCATCGGTATCTCAGAGATATTGCAGGAGTGGTGGCTGCTTGTGCTTGGCGGGCTATTTTTACTCGCTTTCGTTTTGCGG
AACTTTTATAAAAGGTCTGAAAGGTTTCGCGATGCTACCGACCGTGGACTCCTGAAGATCCCATTGATTGGCTCCATTCT
CTACAAGTCGGCCATTGCCCGTTATGCCCGTACTCTCGCCACCACTTTTGCGGCCGGTGTGCCGTTGGTAGACGCTCTGG
ACTCGGTCGCCGGTGCGACCGGCAACGTGGTGTTCCGCAACGCCGTGGAGAAGATCAAGGGCGATGTCTCCACCGGTATG
CAGCTCAACTTCTCCATGCGCACTACCGGGGTGTTCTCGTCCATGGCCATCCAGATGACGGCCATCGGTGAAGAGTCCGG
TTCCCTGGACGAGATGCTGTCCAAGGTGGCGACCTTCTATGAAGACGAGGTCGACAACATGGTCGACAACCTCACCACCC
TGATGGAGCCGATGATCATGGCGGTTCTGGGGGTCCTGGTGGGTGGTCTGATCATTGCCATGTACCTGCCCATCTTCCAG
CTCGGCAACGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

77.778

100

0.778
  pilC Acinetobacter baylyi ADP1

60.049

100

0.605
  pilC Acinetobacter baumannii D1279779

59.406

99.753

0.593
  pilC Legionella pneumophila strain ERS1305867

54.408

98.025

0.533
  pilG Neisseria meningitidis 44/76-A

45.966

100

0.464
  pilG Neisseria gonorrhoeae MS11

45.477

100

0.459
  pilC Vibrio cholerae strain A1552

41.481

100

0.415
  pilC Vibrio campbellii strain DS40M4

40.196

100

0.405
  pilC Thermus thermophilus HB27

37.717

99.506

0.375

Multiple sequence alignment