Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BEN83_RS18015 Genome accession   NZ_CP016766
Coordinates   1340145..1341395 (-) Length   416 a.a.
NCBI ID   WP_094130276.1    Uniprot ID   -
Organism   Ligilactobacillus agilis strain La3     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1335145..1346395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN83_RS18000 (BEN83_06850) - 1335236..1337098 (-) 1863 WP_094130273.1 monovalent cation:proton antiporter family protein -
  BEN83_RS18005 (BEN83_06855) rny 1337249..1338814 (-) 1566 WP_089145028.1 ribonuclease Y -
  BEN83_RS18010 (BEN83_06860) recA 1338989..1340071 (-) 1083 WP_050611218.1 recombinase RecA Machinery gene
  BEN83_RS18015 (BEN83_06865) cinA 1340145..1341395 (-) 1251 WP_094130276.1 competence/damage-inducible protein A Machinery gene
  BEN83_RS18020 (BEN83_06870) pgsA 1341530..1342123 (-) 594 WP_056976996.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BEN83_RS18025 (BEN83_06875) - 1342139..1343062 (-) 924 WP_094130279.1 helix-turn-helix domain-containing protein -
  BEN83_RS18030 (BEN83_06880) ymfI 1343174..1343899 (-) 726 WP_094130282.1 elongation factor P 5-aminopentanone reductase -
  BEN83_RS18035 (BEN83_06885) yfmH 1343907..1345202 (-) 1296 WP_094130285.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45260.95 Da        Isoelectric Point: 6.3702

>NTDB_id=192029 BEN83_RS18015 WP_094130276.1 1340145..1341395(-) (cinA) [Ligilactobacillus agilis strain La3]
MHAEIIAVGTEILLGQIVDTNTRLVGQVLADLGIDVYYQTVVGDNEVRMRAAIDLAAKRSDLVILTGGLGPTKDDLTKQV
VAAYLGKQLVEDEAAMLKIKRHFEISQRKMTANNRLQALYIEGSKPLANETGLAVGDFYQAEQGPDFMLLPGPPSELRPM
LFKVALPLLKQAYRQDQILSSRVLRFFGIGESQLASQLDDLIENQTNPTIAPYAKDNEVTLRLTASAKNEQEAQALLDGL
ESKIAKRCGQYLYGYGDDNSLAQVVMTKLREKHLTITAAESLTGGQLQAALTSIPGASQAFMGGFVTYANYAKEKLLAIP
AEVIDKHGSVSEQTAILMAEQAKQKLGADVGVSLTGVAGPDSLEGQPVGTVWIGIAYRNKAGYAQKFHFPRQRKYVQARA
VLTALDLVRKELLSEN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=192029 BEN83_RS18015 WP_094130276.1 1340145..1341395(-) (cinA) [Ligilactobacillus agilis strain La3]
ATGCATGCAGAAATAATTGCAGTAGGAACAGAAATATTATTAGGTCAAATTGTCGATACTAATACAAGGTTAGTCGGTCA
GGTTTTAGCCGATTTGGGGATAGATGTCTATTACCAAACCGTGGTTGGCGATAACGAAGTTAGGATGAGAGCTGCGATTG
ATTTGGCGGCTAAACGAAGTGACCTAGTGATCCTTACTGGGGGCTTGGGACCAACTAAAGACGATTTGACTAAGCAAGTT
GTTGCAGCTTATCTAGGTAAGCAGTTAGTTGAAGATGAAGCGGCCATGCTTAAGATTAAGCGTCACTTTGAAATTAGTCA
GCGCAAGATGACGGCTAACAATCGCTTGCAGGCCCTTTATATCGAAGGTTCAAAGCCACTTGCAAATGAGACGGGGCTAG
CCGTGGGTGACTTTTATCAAGCTGAGCAGGGACCTGATTTTATGTTGCTACCGGGACCGCCAAGTGAGTTAAGACCAATG
CTGTTTAAGGTTGCCTTACCCTTGCTAAAACAAGCTTACCGGCAAGACCAAATTTTAAGTTCAAGGGTGTTGCGCTTCTT
TGGTATTGGGGAGTCACAATTAGCTAGCCAGTTGGATGATTTAATTGAAAATCAAACTAACCCAACGATAGCACCTTATG
CTAAGGATAATGAGGTTACTTTGCGGTTAACGGCCAGTGCTAAAAACGAACAAGAAGCGCAGGCCTTACTTGATGGGCTA
GAAAGTAAAATTGCTAAGCGCTGTGGTCAATATTTATATGGCTATGGCGACGATAATAGCTTAGCTCAAGTTGTAATGAC
TAAGTTAAGAGAAAAACACCTAACCATAACAGCGGCAGAAAGCCTAACAGGTGGTCAACTTCAAGCGGCGCTAACAAGTA
TTCCCGGTGCTTCGCAAGCCTTTATGGGAGGCTTTGTCACCTATGCAAACTATGCTAAGGAAAAATTGTTAGCTATTCCA
GCGGAGGTCATTGATAAGCATGGGAGCGTTAGTGAACAGACTGCGATTTTAATGGCTGAGCAAGCTAAACAAAAGCTAGG
AGCTGATGTGGGGGTTAGTTTGACTGGGGTAGCTGGTCCTGATAGCTTAGAGGGGCAACCGGTGGGGACCGTTTGGATTG
GAATTGCTTATCGAAATAAAGCTGGTTATGCCCAAAAATTCCATTTCCCAAGGCAGAGAAAGTATGTGCAAGCAAGAGCG
GTGCTGACTGCCTTAGATTTAGTCAGAAAAGAATTGTTAAGCGAAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.235

100

0.534
  cinA Streptococcus mitis NCTC 12261

52

100

0.531
  cinA Streptococcus pneumoniae TIGR4

51.887

100

0.529
  cinA Streptococcus pneumoniae R6

51.651

100

0.526
  cinA Streptococcus pneumoniae Rx1

51.651

100

0.526
  cinA Streptococcus mutans UA159

52.392

100

0.526
  cinA Streptococcus pneumoniae D39

51.415

100

0.524
  cinA Bacillus subtilis subsp. subtilis str. 168

47.561

98.558

0.469
  cinA Streptococcus suis isolate S10

43.705

100

0.442

Multiple sequence alignment