Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BEN83_RS18010 Genome accession   NZ_CP016766
Coordinates   1338989..1340071 (-) Length   360 a.a.
NCBI ID   WP_050611218.1    Uniprot ID   -
Organism   Ligilactobacillus agilis strain La3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1333989..1345071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN83_RS17995 (BEN83_06845) - 1334922..1335068 (-) 147 WP_082174180.1 teichoic acid D-Ala incorporation-associated protein DltX -
  BEN83_RS18000 (BEN83_06850) - 1335236..1337098 (-) 1863 WP_094130273.1 monovalent cation:proton antiporter family protein -
  BEN83_RS18005 (BEN83_06855) rny 1337249..1338814 (-) 1566 WP_089145028.1 ribonuclease Y -
  BEN83_RS18010 (BEN83_06860) recA 1338989..1340071 (-) 1083 WP_050611218.1 recombinase RecA Machinery gene
  BEN83_RS18015 (BEN83_06865) cinA 1340145..1341395 (-) 1251 WP_094130276.1 competence/damage-inducible protein A Machinery gene
  BEN83_RS18020 (BEN83_06870) pgsA 1341530..1342123 (-) 594 WP_056976996.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BEN83_RS18025 (BEN83_06875) - 1342139..1343062 (-) 924 WP_094130279.1 helix-turn-helix domain-containing protein -
  BEN83_RS18030 (BEN83_06880) ymfI 1343174..1343899 (-) 726 WP_094130282.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38938.53 Da        Isoelectric Point: 5.4034

>NTDB_id=192028 BEN83_RS18010 WP_050611218.1 1338989..1340071(-) (recA) [Ligilactobacillus agilis strain La3]
MVADERKAALDVALKKIEKNFGKGSIMRMGEKADTQISTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKNGGTAAYIDAENALDPAYATALGVDIDQLLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKDGSEIIGN
RVKIKVVKNKVAPPFRIAEVDIMYGEGISKTGELIDMAVEKDIINKSGSWFSYGEERIGQGRENAKKYLLEHAEMMNEIY
LKVRKAYGIADADEEAQLELKLGDKQDKPDAKEKTAKDKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=192028 BEN83_RS18010 WP_050611218.1 1338989..1340071(-) (recA) [Ligilactobacillus agilis strain La3]
GTGGTAGCTGATGAAAGAAAAGCTGCGTTAGACGTAGCTTTAAAAAAAATAGAGAAGAATTTCGGTAAGGGTTCAATTAT
GCGAATGGGTGAAAAAGCTGATACGCAAATTTCAACCGTATCTAGTGGTTCTTTAGCCTTGGATGAAGCCTTAGGAGTCG
GTGGTTATCCTCGAGGAAGAATTGTTGAAATTTATGGGCCTGAAAGTTCTGGTAAAACAACGGTAGCCTTGCACGCGGTG
GCTGAAGTTCAAAAAAATGGTGGGACTGCCGCTTATATTGATGCTGAAAACGCACTTGACCCAGCTTATGCAACTGCTCT
AGGGGTAGATATTGATCAACTCTTGTTATCACAACCAGATACGGGGGAACAAGGGCTAGAAATTGCCGATGCCTTGGTTT
CTTCCGGTGCAATTGACATTGTGGTAGTTGACTCAGTAGCTGCCTTGGTACCTCGGGCCGAAATTGAGGGTGAAATGGGT
GATTCCCACGTAGGGCTGCAAGCACGATTAATGTCGCAAGCATTGCGCAAGCTATCCGGGACTATCAATAAAACTAAGAC
CATCGCCTTGTTTATTAACCAAATTCGTGAGAAAGTGGGGATTATGTTTGGTAACCCTGAAACAACTCCAGGGGGAAGGG
CTTTAAAATTTTATTCCACTATTCGTCTAGAGGTAAGACGGGCTGAACAAATTAAGGATGGTTCTGAAATTATTGGGAAC
CGGGTTAAGATAAAGGTTGTCAAAAATAAGGTTGCGCCTCCATTCAGAATTGCCGAAGTTGACATTATGTATGGGGAAGG
TATCTCCAAGACTGGTGAATTAATTGACATGGCCGTCGAAAAAGACATCATCAATAAGAGTGGGTCTTGGTTCTCTTATG
GAGAGGAACGAATTGGTCAAGGTCGTGAAAATGCTAAGAAGTACCTCTTAGAACATGCAGAAATGATGAATGAGATTTAT
CTCAAAGTTAGAAAGGCATATGGGATTGCTGATGCCGATGAAGAGGCACAATTAGAATTGAAACTTGGCGATAAGCAAGA
CAAGCCGGATGCTAAGGAAAAGACGGCCAAAGATAAGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.567

93.056

0.806
  recA Bacillus subtilis subsp. subtilis str. 168

77.231

90.278

0.697
  recA Streptococcus mutans UA159

68.555

98.056

0.672
  recA Streptococcus pneumoniae TIGR4

68.272

98.056

0.669
  recA Streptococcus pneumoniae R6

68.272

98.056

0.669
  recA Streptococcus pneumoniae Rx1

68.272

98.056

0.669
  recA Streptococcus pneumoniae D39

68.272

98.056

0.669
  recA Streptococcus pyogenes NZ131

70.997

91.944

0.653
  recA Lactococcus lactis subsp. cremoris KW2

69.94

93.333

0.653
  recA Streptococcus mitis SK321

69.436

93.611

0.65
  recA Streptococcus mitis NCTC 12261

69.436

93.611

0.65
  recA Neisseria gonorrhoeae strain FA1090

63.83

91.389

0.583
  recA Neisseria gonorrhoeae MS11

63.83

91.389

0.583
  recA Neisseria gonorrhoeae MS11

63.83

91.389

0.583
  recA Glaesserella parasuis strain SC1401

58

97.222

0.564
  recA Ralstonia pseudosolanacearum GMI1000

64.856

86.944

0.564
  recA Acinetobacter baylyi ADP1

57.429

97.222

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

90.278

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

91.111

0.553
  recA Acinetobacter baumannii D1279779

57.184

96.667

0.553
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.245

90.833

0.547
  recA Helicobacter pylori 26695

59.451

91.111

0.542
  recA Helicobacter pylori strain NCTC11637

59.451

91.111

0.542
  recA Pseudomonas stutzeri DSM 10701

57.958

92.5

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.317

89.444

0.531
  recA Vibrio cholerae strain A1552

59.317

89.444

0.531

Multiple sequence alignment