Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BEN83_RS18130 Genome accession   NZ_CP016766
Coordinates   1362151..1363959 (-) Length   602 a.a.
NCBI ID   WP_094130316.1    Uniprot ID   -
Organism   Ligilactobacillus agilis strain La3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1357151..1368959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN83_RS18105 (BEN83_06955) mgtE 1357562..1358926 (-) 1365 WP_094130307.1 magnesium transporter -
  BEN83_RS18110 (BEN83_06960) - 1358942..1359835 (-) 894 WP_094130310.1 RluA family pseudouridine synthase -
  BEN83_RS18115 (BEN83_06965) - 1359825..1360643 (-) 819 WP_056976982.1 NAD kinase -
  BEN83_RS18120 (BEN83_06970) - 1360657..1361298 (-) 642 WP_089144115.1 GTP pyrophosphokinase -
  BEN83_RS18125 (BEN83_06975) - 1361463..1362101 (+) 639 WP_225427526.1 DsbA family protein -
  BEN83_RS18130 (BEN83_06980) pepF 1362151..1363959 (-) 1809 WP_094130316.1 oligoendopeptidase F Regulator
  BEN83_RS18135 (BEN83_06985) - 1364003..1364920 (-) 918 WP_094130319.1 competence protein CoiA -
  BEN83_RS18140 (BEN83_06990) - 1365094..1365852 (-) 759 WP_056976977.1 adaptor protein MecA -
  BEN83_RS18145 (BEN83_06995) spxA 1365969..1366370 (-) 402 WP_050612525.1 transcriptional regulator SpxA -
  BEN83_RS18150 (BEN83_07000) - 1366719..1367279 (+) 561 WP_094130322.1 M15 family metallopeptidase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68850.78 Da        Isoelectric Point: 4.9581

>NTDB_id=192030 BEN83_RS18130 WP_094130316.1 1362151..1363959(-) (pepF) [Ligilactobacillus agilis strain La3]
MTEVKKLPQRKEVPVELTWDLELIFANSGEFDTAVTELEQQATTFLTYQGQVGQSAQTLLTALEAWLDLDRALEKIYVYA
SMKNDQDTKNAEYQALFTRVQKLVAEVSAKIAWFEPELLALSEETVATYLQVEPKLQQYQHLLEVLLAKKAHILSDKEEA
LLAGASDILGAPENIFGVLNNADFKFAQVSDEAGNKVQLSQGLYGKLLESVNREVRKEAFEKLYLVYHQFRHTLATTLAT
HVRMHNFEAKLRGYNSAQERALASNSIPVKVYTTLLEQVEQHLPLLHRYVELRKKVLGLTELHMYDLYTPLTGKANLAYT
YEEAKQESLKALAVLGDDYLEHVKEAYASRWIDVVENEGKRSGAYSSGVYDTAPYILLNWQDNLDNLFTLVHEMGHSMHT
YLTTHNQPYQYGDYPIFLAEIASTTNENLLTQYLLETQKDPQVQAYVLNHYLDGFKGTVFRQAQFAQFELWLHEQEASDQ
ALTAEKLADYYGKLNQHYYGSAVVNDQQIAYEWARIPHFYYNFYVYQYATGFAAATTLSQNILSKDPAKLTAYLDYLQAG
SSNYPLEVMKQAGVNMEESAYLQEAFKVFEKRLNQLEGLLLK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=192030 BEN83_RS18130 WP_094130316.1 1362151..1363959(-) (pepF) [Ligilactobacillus agilis strain La3]
ATGACTGAGGTAAAAAAATTACCCCAAAGAAAAGAAGTTCCCGTAGAATTAACTTGGGATTTAGAGTTGATTTTTGCAAA
TAGCGGTGAATTTGATACCGCTGTTACGGAGTTAGAGCAACAAGCAACAACTTTCTTAACCTATCAAGGCCAAGTAGGAC
AAAGTGCCCAAACGTTATTGACAGCTTTAGAAGCGTGGTTAGACTTAGATCGTGCCTTAGAAAAAATCTATGTCTATGCT
AGCATGAAAAATGATCAAGATACTAAAAACGCTGAATATCAAGCGTTATTCACACGGGTTCAAAAGTTAGTGGCGGAAGT
CTCCGCTAAGATAGCTTGGTTTGAACCAGAATTGCTGGCCTTATCCGAAGAAACGGTTGCAACTTACTTACAGGTTGAGC
CTAAGTTACAGCAGTATCAACATTTATTGGAGGTACTATTAGCTAAAAAAGCCCATATTTTAAGCGACAAGGAAGAAGCC
TTGTTAGCGGGAGCTAGTGATATTTTAGGAGCGCCCGAAAATATTTTTGGGGTACTAAACAATGCCGACTTTAAGTTTGC
GCAAGTTAGTGATGAAGCGGGGAATAAAGTTCAACTATCACAGGGACTTTATGGAAAATTATTAGAATCCGTAAACCGGG
AAGTAAGAAAAGAGGCCTTTGAAAAGCTTTACCTAGTCTATCATCAATTTAGACACACCCTGGCTACTACATTAGCTACC
CACGTGCGGATGCATAATTTTGAAGCTAAATTACGTGGTTATAATTCAGCCCAAGAACGAGCCTTGGCAAGTAATTCTAT
TCCGGTTAAAGTATACACCACTTTACTGGAACAGGTTGAACAACACCTACCATTGTTACACCGATATGTTGAATTGAGAA
AAAAGGTCTTAGGCCTAACCGAATTGCATATGTATGATTTGTATACTCCCCTTACAGGTAAAGCCAACTTAGCCTATACC
TACGAGGAAGCTAAGCAAGAGAGTTTAAAGGCGCTAGCGGTTCTTGGCGATGACTATTTAGAACACGTGAAGGAAGCCTA
TGCTAGTCGGTGGATTGATGTGGTTGAAAACGAAGGTAAGCGAAGTGGTGCTTACTCTTCCGGGGTATATGATACTGCAC
CGTATATTTTATTAAACTGGCAAGATAATTTAGATAATTTATTTACACTTGTACATGAAATGGGTCACAGTATGCACACT
TACCTTACAACGCATAACCAACCTTATCAGTATGGAGATTATCCCATCTTTTTAGCAGAAATTGCTTCAACCACTAATGA
GAACTTGCTAACCCAATATTTGTTGGAGACGCAAAAAGATCCGCAAGTACAGGCTTACGTTTTAAATCATTATTTAGATG
GGTTTAAGGGAACCGTGTTTAGACAAGCTCAGTTTGCCCAATTTGAGTTATGGCTACATGAACAAGAGGCTAGTGACCAG
GCATTAACAGCCGAAAAGTTAGCCGATTATTATGGTAAATTAAACCAACATTATTATGGTTCGGCCGTGGTTAATGACCA
GCAAATTGCCTACGAATGGGCCCGGATTCCTCATTTTTACTATAATTTCTATGTTTATCAATATGCGACGGGATTTGCGG
CGGCAACAACCCTTTCCCAAAATATTTTAAGCAAAGACCCAGCTAAGTTAACTGCTTACCTAGACTATCTTCAAGCGGGT
AGTTCTAACTACCCACTTGAAGTTATGAAACAAGCTGGGGTAAATATGGAAGAAAGTGCCTACCTGCAAGAGGCGTTTAA
AGTATTTGAAAAGCGGTTGAATCAATTAGAGGGTTTATTACTCAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.862

98.671

0.522

Multiple sequence alignment